Pairwise Alignments

Query, 251 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

Subject, 263 a.a., RNA methyltransferase, TrmH family, group 3 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  127 bits (320), Expect = 2e-34
 Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 6/235 (2%)

Query: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65
           ++G+HAV   L +  +   ++ +    ++   +A+       ++A  +     +D     
Sbjct: 26  LFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAPEIADPRRFPAPLDPG--S 83

Query: 66  VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125
           VHQG   +V P   WG      L    +  PL+++LD VTDPHN+GA LRSA+  GA AV
Sbjct: 84  VHQGAALEVKPL-AWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAAAV 142

Query: 126 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSIYD 185
           I     +A  T  + K A GA E  P + V NLA T+E+L+  G  ++G  G AE +I  
Sbjct: 143 ISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTIGT 202

Query: 186 --QDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLF 237
             +DLT  P  L++GAEG G+R  T+E C+ LV +P A    SLNVS A  V L+
Sbjct: 203 ALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALY 257