Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 833 a.a., ribonuclease R from Pseudomonas stutzeri RCH2

 Score = 1319 bits (3414), Expect = 0.0
 Identities = 670/879 (76%), Positives = 743/879 (84%), Gaps = 50/879 (5%)

Query: 1   MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR 60
           MADWQSLDPEAAREAEKY+NPIPSRELIL HL +RGSPA+RE+LVEEFGL +E+ +EALR
Sbjct: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQHLGERGSPAAREELVEEFGLVSEEDIEALR 60

Query: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR 120
           RRLRAMERD QLIYTRRGTYAPVDKLDL+ GR++GHRDGFGFLIPDDGSDDLF+SPAQMR
Sbjct: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMR 120

Query: 121 LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV 180
           LVFDGDR LARV+GLDRRGRREG IVEV+SRAHESIVGRY  E  +GFV+PDNPK+QQEV
Sbjct: 121 LVFDGDRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVIPDNPKIQQEV 180

Query: 181 LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV 240
           L+TPGR   AK GQFVEVKITHWPT RFQPQGDIVEV+GNYMAPGMEIDVALR++DIPHV
Sbjct: 181 LVTPGRALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHV 240

Query: 241 WPEAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS 300
           WPEAVLKEA +LKPEVEEKDK KR+DLRHLPFVTIDGEDARDFDDAVYCE KPG  +L +
Sbjct: 241 WPEAVLKEASRLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCE-KPGGWKLLT 299

Query: 301 GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR 360
           GG++L+VAIADVS YVK+ SALD E+ VRGNSVYFPERV+PMLPE+LSNGLCSLNP+VDR
Sbjct: 300 GGFRLYVAIADVSHYVKVDSALDKESVVRGNSVYFPERVVPMLPEELSNGLCSLNPQVDR 359

Query: 361 LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVP 420
           LAMVCE+T+SK+G+MTDYQFYEAVIHS ARLTYNKVS +LE PK++E K L +EYA V+P
Sbjct: 360 LAMVCEITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLP 419

Query: 421 HLKQLYSLYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA 480
           HLKQLYSLYKVLL ARHTRGAIDFETQETRIVFGS+RKIA I PT RNDAHKLIEECML 
Sbjct: 420 HLKQLYSLYKVLLKARHTRGAIDFETQETRIVFGSDRKIAEIKPTERNDAHKLIEECMLC 479

Query: 481 ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA 540
           ANVATA FL+KHEIPALYRVHD PP ER EKLRAFLGELGLSLHKGK+GPTPKDYQALL 
Sbjct: 480 ANVATAAFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLE 539

Query: 541 SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS 600
            I+ RPD+HVIQTVMLRSLSQAVYSA+N GHFGLNYEAY HFTSPIRRYPDLL HRAIRS
Sbjct: 540 QIQGRPDFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRS 599

Query: 601 VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE 660
           VI S+++TPHV+R GA ++PKARIYPYDEAALEQLGEQCSM+ERRADEATRDV NWLKCE
Sbjct: 600 VIRSRRDTPHVRREGATSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVTNWLKCE 659

Query: 661 FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG 720
           FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTA+PGDYYHFDP+HHRL+GER+G
Sbjct: 660 FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSG 719

Query: 721 RSFRLGDTVEVQVMRVDLDERKIDFGM-SDKPAESPGSR--KKRGSEPASKGKAAPAKAT 777
           RSFRLGD+VEV+VMRVDLDERKIDF + +     +PG R  + RG EP +          
Sbjct: 720 RSFRLGDSVEVRVMRVDLDERKIDFELIAGGTKSAPGQRDGEGRGREPGNAD-------- 771

Query: 778 AAEPAPAKAGRRSSTKEKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGK 837
                                         K+ EL+K+      LL EAK GG+   G K
Sbjct: 772 ----------------------------VRKSRELKKA------LLEEAK-GGRKGKGEK 796

Query: 838 SRGAENPSSKPSKHRKGPPKAGSAP-AKSGGSRKPKAKS 875
           S G+++ S   S   K   K+G  P A SGG RK KAKS
Sbjct: 797 STGSKSRSG--SAKPKSAAKSGDKPSAASGGPRKRKAKS 833