Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

 Score =  176 bits (445), Expect = 5e-48
 Identities = 157/582 (26%), Positives = 260/582 (44%), Gaps = 50/582 (8%)

Query: 91  GRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDGDRALARVSGLDRRGRREGVIVEVVS 150
           G I     GFGFL   D     F+ P  M+    GD+ +A +   + R   E    E++ 
Sbjct: 24  GTIKASDKGFGFL-EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80

Query: 151 RAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPGRNGAAKV----GQFVEVKITHWPTA 206
           ++    +GR     G   V PD+P++++  L    + G  +     G +V   +   P  
Sbjct: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140

Query: 207 RFQPQGDIVEVVGNYMAPGMEID---VALRTYDIPHVWPEAVLKEAGKLKPEVEEKDKEK 263
                G  V++         +I    V L   D+P+  P  +  +  +LK + +      
Sbjct: 141 G--DDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI--DDWQLKDDADLV---- 192

Query: 264 RIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIADVSSYVKIGSALD 323
           R DL  LPFVTIDGE  +D DDA+Y +  P      +G + L +AIAD ++Y+     +D
Sbjct: 193 REDLTALPFVTIDGESTKDMDDALYAQQLP------NGDFALTIAIADPTAYITPEDEMD 246

Query: 324 NEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTISKTGEM-TDYQFYE 382
             A+ RG ++Y P R IPMLP  L++ LCSL     R A+ C +TI K G +  D +F+ 
Sbjct: 247 KVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFA 306

Query: 383 AVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQLYSLYKVLLGARHTRGAI 442
           A I S ARL Y+ VS  LET  +SE      E A VV   + LY+  +     R T   +
Sbjct: 307 ANIKSHARLVYDHVSDWLET-GSSEQWQPSEEIAQVV---RDLYAFSQARANWRETHAVV 362

Query: 443 DFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALYRVHD 502
             +  + R    ++  + AI    R  A++L+EE M+ AN+   + L+      ++  H 
Sbjct: 363 FPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHA 422

Query: 503 GPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYHVIQTVMLRSLSQA 562
           G   E++  +   +   G      +   T + + AL   +  +   ++   +  +  S +
Sbjct: 423 GFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR-KYQSYS 481

Query: 563 VYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNTPHVKRAGAMTIPKA 622
                   HF +  + Y  +TSPIR+Y D++ HR +++ I                + KA
Sbjct: 482 EIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI----------------LGKA 525

Query: 623 RIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKD 664
            +   DE     +GE+ ++  +    A R+V +WL    + D
Sbjct: 526 PVQTPDET----VGEELALHRKHHKIAERNVADWLYARTLAD 563