Pairwise Alignments

Query, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

Subject, 760 a.a., ribonuclease R from Caulobacter crescentus NA1000

 Score =  372 bits (954), Expect = e-107
 Identities = 272/780 (34%), Positives = 392/780 (50%), Gaps = 50/780 (6%)

Query: 22  IPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALRRRLRAMERDAQLIYTRRGTYA 81
           +P RE +LA L D G    +  +   FGL   D+  ALR  +R +E    L    R  +A
Sbjct: 18  LPDRETLLAFLRDAGE-TGKADIARHFGLKGADR-RALREMIRELEAQGALAKRGRKGFA 75

Query: 82  PVDKLDLILGRIAGHRDGFGFLI-----PDDGSDDLFMSPAQMRLVFD----GDRALARV 132
               L  +       RDG G L       DD   ++ ++P +          GDR L R 
Sbjct: 76  EAGSLPPVGVADVVERDGDGELYVKLTKSDDDVPNVRLAPGKGEAAAGAPGLGDRLLVRF 135

Query: 133 SGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPGRNGAAKV 192
             L+  G  E  +++ + ++   I+G   +      V P + K ++ +++ P      K 
Sbjct: 136 ERLET-GEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKESLVLDPSVAHDFKE 194

Query: 193 GQFVEVKI-THWPTARFQPQ-GDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAG 250
           G  V  ++ TH    R+ P+ G ++EVVG    P     +A+ ++ IP  + EA   EA 
Sbjct: 195 GDLVLAQVGTHG--GRYGPKPGKVLEVVGTENDPRAASLIAIHSHGIPTGFSEAAEAEA- 251

Query: 251 KLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIA 310
                  E     R DLR LPFVTID  DARD DDAVY  A P +     GG+ ++VAIA
Sbjct: 252 ---KTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVY--AHPDEDETNKGGFVVWVAIA 306

Query: 311 DVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTIS 370
           DV++YV+ GSALD +A+ +GNSVYFP+RV PMLPE LSNGLCSL    +R  +   M   
Sbjct: 307 DVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLAVRMVFD 366

Query: 371 KTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQLYSLYK 430
           K+G    ++F   ++ S A+L+Y +    ++     +A  L      + P LK L+  Y+
Sbjct: 367 KSGRKKGHRFVRGLMRSAAKLSYEQAQAAIDGQPDDKAGPL------LDPILKPLWDAYR 420

Query: 431 VLLGARHTRGAIDFETQETRIVF-GSERKIAAITPTTRNDAHKLIEECMLAANVATAEFL 489
            +   R  R  +  E+ E RI+  G E  I +IT     +AHKLIEE M+ ANV  AE L
Sbjct: 421 TMKIGRDARSPLAIESDERRIIIKGGE--ITSITKRASLEAHKLIEEMMVQANVCAAESL 478

Query: 490 KKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYH 549
           +    P +YRVHD P  E+++ L  FL  L +   KG + P    +  LL   ++ P+  
Sbjct: 479 EAKRSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKG-EAPQTARFNKLLEETRESPNAA 537

Query: 550 VIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNTP 609
           +I  V+LR+  QA YSADN GHFGLN   Y HFTSPIRRY DL+ HR +           
Sbjct: 538 IINEVVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGL----------- 586

Query: 610 HVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDRVGET 669
                 A+ +    +   D A ++   E  + +ERRA  A RD  +     F+ DRVG T
Sbjct: 587 ----IRALGLGTDGLTDQDIAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVGAT 642

Query: 670 FPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRLGDTV 729
           F G IT VT FGLF++L D   +GLV V++L  +++  D   H L GERTG+ + LG +V
Sbjct: 643 FEGRITGVTRFGLFIKLADTGADGLVPVSSLGQEFFVHDDKMHALVGERTGKRWPLGLSV 702

Query: 730 EVQVMRVDLDERKIDFGMSDKPAESPGSRKKRGSEPASKGKAAPAKATAAEPAPAKAGRR 789
           EV+++        + F M  +P   P   K       ++ +AA  K     P   + G+R
Sbjct: 703 EVKLVEATPVTGGLLFEMLSEPL--PPDPKMPRPRLGARRQAA-VKPRGGLPKGVRRGKR 759