Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

Subject, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score = 1929 bits (4998), Expect = 0.0
 Identities = 970/1359 (71%), Positives = 1140/1359 (83%), Gaps = 20/1359 (1%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60
            M YSYTEKKRIRKDF   P V+D+PYLL+IQLDS+ +F++    +D     GL AAF+SV
Sbjct: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIE----QDPEGQYGLEAAFRSV 56

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120
            FPI SY+GN+ L+YV YRLGEP FDVKEC +RGVTY+ PLRVK+RL+IFDK++    +KD
Sbjct: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKD 116

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARI
Sbjct: 117  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET 240
            IPYRGSWLDFEFDPKD ++VRIDRRRKLPAS++LRALG T+ ++LD F+    F +KD+T
Sbjct: 177  IPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236

Query: 241  LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR 300
            L +EL+  RLRGE A  DI+ + GKV VE GRR+TARHI Q+EK G+  +EVP++Y++G+
Sbjct: 237  LMMELVPERLRGETATFDIEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295

Query: 301  TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS 360
             +AK  V+ ATGE++   N E++ E LA +++A   ++E L+TND+D GPF+S+TL++DS
Sbjct: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE 420
            T++++ ALVEIYRMMRPGEPPTK+AAE+LF +LFFS ERYDLS VGRMKFN  IGR + E
Sbjct: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415

Query: 421  GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
              G L + DI+ V+K L+ IRNGKG VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 416  EQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVYALGP 540
            KERLS+ + + +MPQDLINAKP++AAVKEFFGSSQLSQFMDQNNPLSE+THKRR+ ALGP
Sbjct: 476  KERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 535

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+A+AR N+YGFLE+PYR V 
Sbjct: 536  GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 595

Query: 601  DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV 660
            + +VTDE+ +LSAIEE   VIAQA+A + ++    DELV  R   E  +   E V  MDV
Sbjct: 596  NGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDV 655

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            +  QVVS+AASLIPFLEHDDANRALMG+NMQRQAVPTLR++KPLVGTG+ERNVA DSGV 
Sbjct: 656  ATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVT 715

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
             VA+RGGVI SVDASRIVV+V ++E+  GEAG+DIYNLTKYTRSNQNTCINQRP V  G+
Sbjct: 716  AVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGE 775

Query: 781  RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
             V R D++ADGPSTD+GELALGQNMRIAFM WNG+NFEDSI +SERVVQ+DRFTTIHIQE
Sbjct: 776  PVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQE 835

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
            L+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 836  LSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 895

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE 960
            TPEEKLLRAIFGEKASDVKDTSLRVP    GTVIDVQVFTRDGVE+D RAL IE+ QL E
Sbjct: 896  TPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKE 955

Query: 961  IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA 1020
             +KDL EEF+I+EG    R+RS L+     GG         T+  L  +E  +W +  + 
Sbjct: 956  AKKDLTEEFQILEGGLLARVRSVLLA----GG--------YTEAKLGSIERKKWLEQTLE 1003

Query: 1021 EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080
             + L  QLE+      + +   D KFE K+RK+ QGDDLAPGVLKIVKVYLA++RRIQPG
Sbjct: 1004 NEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063

Query: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140
            DKMAGRHGNKGV+S I PVEDMP+D NG PVD+VLNPLGVPSRMN+GQILE HLGLAAKG
Sbjct: 1064 DKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKG 1123

Query: 1141 LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELD--TFSDQEILDLAKNLRGGVPMA 1198
            +G+KIN+MI+EQ+++A LR+FL ++Y ++G   + +D    SD+++  LA NLR G+P+A
Sbjct: 1124 IGDKINQMIKEQQELAKLREFLQKVY-DLGDTRQRVDISELSDEDVRTLAHNLRAGLPVA 1182

Query: 1199 TPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKM 1258
            TPVFDGA ES IKAML+LADLP SGQ+ LFDGRTG+ FERPVTVGYMYMLKLNHLVDDKM
Sbjct: 1183 TPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKM 1242

Query: 1259 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1318
            HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
Sbjct: 1243 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1302

Query: 1319 MYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357
            MYKNIVDG+H MEPGMPESFNVL+KEIRSLGI+I+LE E
Sbjct: 1303 MYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341