Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

Subject, 1380 a.a., DNA-directed RNA polymerase subunit beta from Sinorhizobium meliloti 1021

 Score = 1600 bits (4142), Expect = 0.0
 Identities = 800/1358 (58%), Positives = 1038/1358 (76%), Gaps = 7/1358 (0%)

Query: 4    SYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSVFPI 63
            S+  ++R+RK F K+P+V ++P L+ +Q  SY +FL     +    D GL A FKSVFPI
Sbjct: 6    SFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFKSVFPI 65

Query: 64   ISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFD--KESSNKAIKDI 121
              +SG + LE+V Y    P FDV+EC  R +TYA PL+V +RLI+FD  +++  K+IKDI
Sbjct: 66   KDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDI 125

Query: 122  KEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARII 181
            KEQ VYMG++PLMT+NGTF++NGTERVIVSQ+HRSPGVFFDHD+GK+HSSGKLL++AR+I
Sbjct: 126  KEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185

Query: 182  PYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDETL 241
            PYRGSWLD EFD KD V  RIDRRRK+P + LL ALG   E++LD FYT +++    E  
Sbjct: 186  PYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQRDGEGW 245

Query: 242  KLELIASRLRGEIAVLDIQD-EKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR 300
            ++      L+G+  + D+ D + G+V+VE+G+++T R + Q+++ G+K L+   D + G 
Sbjct: 246  RVPFQPDALKGQKTLADMIDADTGEVVVESGKKLTPRLLRQLQEKGLKALKATDDDLYGN 305

Query: 301  TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS 360
              A+ +V+  TGEI  E   E++ + L  I  A    I  L  + I+ G +I +TL  D 
Sbjct: 306  YLAEDVVNFETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRNTLSADK 365

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE 420
              N+ +AL +IYR+MRPGEPPT D+AE +FN LFF  ERYDLSAVGR+K N R+     +
Sbjct: 366  NENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLDLDVPD 425

Query: 421  GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
                L KEDI+AV+K LV++R+GKG +DDID+LGNRRVR VGE+ ENQ+R+GL+R+ERA+
Sbjct: 426  TVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAI 485

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVYALGP 540
            KER+S  E + +MPQDLINAKP AAAV+EFFGSSQLSQFMDQ NPLSEITHKRR+ ALGP
Sbjct: 486  KERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGP 545

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +AR N+YGF+ESPYR + 
Sbjct: 546  GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIV 605

Query: 601  DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV 660
            D  VT+++V+LSA+EEA + +AQA++ ++D     +E V  RH  E  +   +++ LMDV
Sbjct: 606  DGKVTNDVVYLSAMEEAKYHVAQANSVLDDDGSFSEEFVVCRHAGEVMLAPRDNINLMDV 665

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            SPKQ+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP LRA+ P VGTGME  VARDSG  
Sbjct: 666  SPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVARDSGAA 725

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
            + ARRGG++D VDA+RIV+R  +D ++  ++GVDIY L K+ RSNQNTC+NQRPLV+ GD
Sbjct: 726  IAARRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGD 784

Query: 781  RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
             + + DI+ADGPSTD+G+LALG+N  +AFM WNG+N+EDSI LSER+V++D FT+IHI+E
Sbjct: 785  VINKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEE 844

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
               +ARDTKLGPEEIT DIPNV E AL  LDEAGIVY+GAEV  GDILVGK+TPKGE+ +
Sbjct: 845  FEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPM 904

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE 960
            TPEEKLLRAIFGEKASDV+DTS+R+P GT GTV++V+VF R GVE+D RA++IE+ +++ 
Sbjct: 905  TPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIEREEIER 964

Query: 961  IRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQDITDEILDGLEHGQWFKLRM 1019
            + KD ++E  I++   + RL   L GH A  G  G KKG ++++ ++      QW+   +
Sbjct: 965  LAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNVVISEYPRSQWWMFAI 1024

Query: 1020 AEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQP 1079
             ++    ++E  +A   + +  L+ +F DK  K+Q+GD++ PGV+K+VKV++A++R+IQP
Sbjct: 1025 EDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQP 1084

Query: 1080 GDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAK 1139
            GDKMAGRHGNKGVVS I+P+EDMP   +GT VDVVLNPLGVPSRMNVGQILETHLG A  
Sbjct: 1085 GDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLGWACA 1144

Query: 1140 GLGEKINRMIEEQRKVADLRKFLHEIYNEIGG--RNEELDTFSDQEILDLAKNLRGGVPM 1197
            G+G+KI  M++  +  AD++     I + IG   + E +  + D+ I+ LA+  R GV +
Sbjct: 1145 GMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRRGVSI 1204

Query: 1198 ATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDK 1257
            ATPVFDGA E+++  ML+ A L  +GQ  L+DGRTG  F+R VTVGY+YMLKLNHLVDDK
Sbjct: 1205 ATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLNHLVDDK 1264

Query: 1258 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1317
            +HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GRT
Sbjct: 1265 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT 1324

Query: 1318 KMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE 1355
            K+Y+ IV GD   E G+PESFNVL+KE+RSLG+ ++LE
Sbjct: 1325 KVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELE 1362