Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

Subject, 1343 a.a., DNA-directed RNA polymerase, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score = 1932 bits (5004), Expect = 0.0
 Identities = 957/1360 (70%), Positives = 1143/1360 (84%), Gaps = 20/1360 (1%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60
            M YSY+EKKRIRKDF K P V+D+PYLL+IQLDS+++F     T ++    GL AAF+SV
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGER----GLEAAFRSV 56

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120
            FPI S+SGN+ L+YV Y+LGEP FDVKEC +RGVTY+ PLRVK+R++++D+E++   +KD
Sbjct: 57   FPIKSFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPGTVKD 116

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            IKEQEVYMG+IPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGK+LY+ARI
Sbjct: 117  IKEQEVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARI 176

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET 240
            IPYRGSWLDFEFDPKD +FVRIDRRRKL AS++LRAL Y+T+ +LD F+    + +K ++
Sbjct: 177  IPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFERVQYKIKKDS 236

Query: 241  LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR 300
            L + L+A RLRGE A  DI+D +G +IVE GRRITARHI Q+EK    ELEVP++Y+ G+
Sbjct: 237  LVMALVADRLRGETASYDIKDAEGNIIVEKGRRITARHIRQLEKTNTTELEVPVEYISGK 296

Query: 301  TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS 360
              A+  + P TGE+L   N E++ E LAK++ A +  I+TLY N++D G +ISDTL+IDS
Sbjct: 297  IAAQDYIDPDTGEVLVSANAEISLEDLAKLSMAGIKDIDTLYVNELDHGAYISDTLRIDS 356

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE 420
            T+N+LEALVEIYRMMRPGEPPTKDAAE LF NLFFS ERYDLS VGRMKFNRR+G  + E
Sbjct: 357  TTNRLEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLGIDDDE 416

Query: 421  GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
            G+G+L KEDIVAV++ +++IRNG   VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 417  GTGILTKEDIVAVMQKIIEIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 476

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVYALGP 540
            +ERLS+ +   LMPQDLINAKP++AAVKEFFGSSQLSQFMDQNNPLSE+THKRR+ ALGP
Sbjct: 477  RERLSLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 536

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA++ARTN YGFLE+PYR V 
Sbjct: 537  GGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVV 596

Query: 601  DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV 660
            D ++TD++ +LSAIEE  +VIAQA+  ++    +V+E +A RH  E T     DV  MDV
Sbjct: 597  DGVITDQVDYLSAIEEGRYVIAQANIEVDADGRMVEEQIACRHKGESTFMRAADVQYMDV 656

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            SP+Q++SVAASLIPFLEHDDANRALMG+NMQRQAVPTLRADKPLVGTG+ER +A DSGV 
Sbjct: 657  SPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVDSGVV 716

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
            V A+RGG +D VDASRIVV+V +DE+  GEAG+DIYNLTKYTRSNQNTCINQRP  S G+
Sbjct: 717  VAAKRGGYVDYVDASRIVVKVNEDELTPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGE 776

Query: 781  RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
             V R D++ADGPSTD+G+LALGQNMRIAFM WNG+NFEDSI +SERV QEDRFTTIHIQE
Sbjct: 777  PVVRGDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQE 836

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
            L+C+ARDTKLG EEITADIPNVGE+AL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 837  LSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 896

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE 960
            TPEEKLLRAIFGEKASDVKD+SLRVP   KGT+IDVQVFTRDGVE+D RA+ IE+  + +
Sbjct: 897  TPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQ 956

Query: 961  IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA 1020
             +KDL EEF+I+E   F R R+ L+      GAG  + +      LD L   Q     + 
Sbjct: 957  AKKDLTEEFKILEEGVFGRARNLLI------GAGFAEAE------LDALPRPQLLVQTIE 1004

Query: 1021 EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080
            ++    +LE+      + +   D KFE K+RK+ QGDDLAPGVLKIVKVYLA++R IQPG
Sbjct: 1005 DETKQTELEQLAEQHEELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPG 1064

Query: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140
            DKMAGRHGNKGV+S I P+EDMP+D NG PVD+VLNPLGVPSRMN+GQ+LE HLG AAKG
Sbjct: 1065 DKMAGRHGNKGVISKINPIEDMPYDENGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKG 1124

Query: 1141 LGEKINRMIEEQRKVADLRKFLHEIYNEIG---GRNEELDTFSDQEILDLAKNLRGGVPM 1197
            +G++I  M+EEQR++A+LR ++ ++Y E+G    +  ++D+F+D+E+L LAKNL+GG+P 
Sbjct: 1125 IGDRITAMLEEQRELAELRGYIKKVY-ELGEDVQQQVDIDSFTDEEVLRLAKNLKGGIPT 1183

Query: 1198 ATPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDK 1257
            ATP FDGAKE EIK ML+LA LP SGQ++LFDGRTGN+FERPVTVGYMYMLKLNHLVDDK
Sbjct: 1184 ATPAFDGAKEKEIKDMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDK 1243

Query: 1258 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1317
            MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT
Sbjct: 1244 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1303

Query: 1318 KMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357
            +MYKNIVDG+H+M+PGMPESFNVL+KEIRSLGI+I+L+ E
Sbjct: 1304 QMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQE 1343