Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

Subject, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

 Score = 1629 bits (4218), Expect = 0.0
 Identities = 879/1444 (60%), Positives = 1037/1444 (71%), Gaps = 108/1444 (7%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60
            M YSYTEKKRIRK F+K   V+DVP+LLA QL+SY  FLQA     + R+ GL AAF S+
Sbjct: 1    MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120
            FPI+S+SGNA LE+V Y+L EPAFDVKEC  RG+T+A  LR KVRL+I D+E+ +  +K+
Sbjct: 61   FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPD-TVKE 119

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            +KEQEVYMGEIPLMT  G+FVINGTERVIVSQLHRSPGVFF+HDRGKTHSSGKLL+SAR+
Sbjct: 120  VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV 179

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET 240
            IPYRGSWLDFEFDPKD +F R+DRRRK+P + LL+A+G T EQ+L  F+  + F L    
Sbjct: 180  IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNG 239

Query: 241  LKLELIASRLRGEIAVLDIQD--------------------------------------- 261
                L+  RLRGE A  D  D                                       
Sbjct: 240  ADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGR 299

Query: 262  ---------EKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR------------ 300
                     + G+VI  A   IT   + ++ +AG+ E +      L R            
Sbjct: 300  VIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRADD 359

Query: 301  TTAKVIVHPATGEIL--AECNTELNTEIL----------------------AKIAKAQVV 336
            T  K     A   ++   E  TE   EIL                       +I +  VV
Sbjct: 360  TATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVV 419

Query: 337  RIETLYTNDIDCGPFISDTLKIDSTSNQ---LEALVEI-YRMMRPGEPPTKDAAETLFNN 392
              +    N       ++  +   + +NQ    E L E+ Y      E  T++AA TL   
Sbjct: 420  EYKVTIKNAPHKTEALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTL--- 476

Query: 393  LFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDH 452
                     L A+G           E+     L   DIV  +K LV++RNG+G +DDIDH
Sbjct: 477  ------AAQLKALG--------ANVEVREQLTLSPRDIVESIKLLVELRNGRGEIDDIDH 522

Query: 453  LGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFG 512
            LGNRRVR VGE+AENQFR GLVRVERAVKERLS AES+ LMP DLINAKP++AA+KEFFG
Sbjct: 523  LGNRRVRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFG 582

Query: 513  SSQLSQFMDQNNPLSEITHKRRVYALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 572
            SSQLSQFMDQ NPLSEITHKRRV ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP
Sbjct: 583  SSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 642

Query: 573  NIGLINSLAAYARTNQYGFLESPYRVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKK 632
            NIGLINSLA +ARTN YGFLE+PYR V D  VTD+I +LSAIEE  +V+AQA+A +    
Sbjct: 643  NIGLINSLALFARTNSYGFLETPYRKVVDGKVTDQIEYLSAIEEGAYVVAQANAALGADG 702

Query: 633  VLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQR 692
             LVDELV  R   E  +  P  V  MDV+P Q+VSVAASLIPFLEHDDANRALMG+NMQR
Sbjct: 703  TLVDELVTCREKGETILAEPSRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQR 762

Query: 693  QAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAG 752
            QAVP LR +KPLVGTG+ER VA DSG  V A RGGV+D VDASR+VVRV DDE   GE G
Sbjct: 763  QAVPCLRPEKPLVGTGIERTVAVDSGTAVQALRGGVVDYVDASRVVVRVHDDETVPGEVG 822

Query: 753  VDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAW 812
            VDIYNLTKYTRSNQNT INQRPLV  GD + + D++ADG STD GELALGQNM IAFM W
Sbjct: 823  VDIYNLTKYTRSNQNTNINQRPLVKMGDIIAKGDVVADGASTDKGELALGQNMLIAFMPW 882

Query: 813  NGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDE 872
            NG+NFEDSI +SERVV EDR+T+IHI+ELT VARDTKLGPEEIT DI ++GE  L++LDE
Sbjct: 883  NGYNFEDSILISERVVAEDRYTSIHIEELTVVARDTKLGPEEITRDIASLGEVQLSRLDE 942

Query: 873  AGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGT 932
            +G+VY+GAEV AGD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVP+G  GT
Sbjct: 943  SGVVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGT 1002

Query: 933  VIDVQVFTRDGVERDARALSIEKTQLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG 992
            VIDVQVFTR+G+ERD RA SI    L   ++DL ++ RIVE  TF R+   + G  A GG
Sbjct: 1003 VIDVQVFTREGIERDKRAQSIIDDHLRGYKQDLADQMRIVERDTFARVGRLITGKPANGG 1062

Query: 993  -AGLKKGQDITDEILDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKR 1051
               L KG  +T E LDG++   WF +RMA++ + +QLE+ +  +   R+  D  FE+K++
Sbjct: 1063 PKKLAKGTVVTQEYLDGIDPHNWFDVRMADEEVAQQLEQLKESLEQTRKDFDIAFEEKRK 1122

Query: 1052 KLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPV 1111
            KL QGD+L PGV K+VKVY+A++RR+QPGDKMAGRHGNKGVVS I+PVEDMP+ A+G PV
Sbjct: 1123 KLTQGDELPPGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSRIVPVEDMPYMADGRPV 1182

Query: 1112 DVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMIEEQRKVADLRKFLHEIYNEIGG 1171
            D+VLNPLGVPSRMNVGQILE HLG AAKGLG KI  M++   K A++RKFL EIYN   G
Sbjct: 1183 DIVLNPLGVPSRMNVGQILEVHLGWAAKGLGYKIGDMLQAGAKAAEVRKFLEEIYNS-EG 1241

Query: 1172 RNEELDTFSDQEILDLAKNLRGGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGR 1231
            + E L+  +DQEI++LA NL  GVP ATPVFDGA E+EIKAML+LA +PESGQ+ L DGR
Sbjct: 1242 KKENLNELNDQEIMELAGNLTTGVPFATPVFDGADEAEIKAMLRLAGMPESGQITLHDGR 1301

Query: 1232 TGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1291
            TG+ FER VTVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVW
Sbjct: 1302 TGDAFERQVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1361

Query: 1292 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGID 1351
            ALEAYGA+Y LQEMLTVKSDDVNGRTK+Y+NIV G+H+++ GMPESFNVL+KEIRSL ID
Sbjct: 1362 ALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLAID 1421

Query: 1352 IDLE 1355
            IDLE
Sbjct: 1422 IDLE 1425