Pairwise Alignments

Query, 944 a.a., excinuclease ABC subunit A from Pseudomonas simiae WCS417

Subject, 885 a.a., Excinuclease ABC subunit A paralog of unknown function from Pseudomonas fluorescens FW300-N2E2

 Score =  502 bits (1293), Expect = e-146
 Identities = 282/745 (37%), Positives = 417/745 (55%), Gaps = 74/745 (9%)

Query: 268 FSFNNPAGACPTCDGLG-VKQFFDIKRLVNGDMTLAEGAIRGWDRRNVYYFQMLGSLASH 326
           FS N P GAC  C GLG V +  +   + +  +T+ E A+  W     +  Q L  +   
Sbjct: 146 FSPNTPQGACQECHGLGRVYEVTEASMVPDPSLTIRERAVAAWPM--AWQGQNLRDILVT 203

Query: 327 YKFSLEVPFNQLPADQQKVILHGSGSQNVD----FKYLNDRGDIVKRSHP-----FEGIV 377
             + +++P+  LP  Q+  IL    +  V           R  + ++  P     F G  
Sbjct: 204 LGYDVDIPWRDLPKQQRDWILFTEQTPTVPVYAGLTPAQTRAALKRKLEPSYQGTFSGAR 263

Query: 378 PNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGD 437
             L   +  ++SA +R+ +A+++   PCP C G RL+R+A  V      +  +++LP+ +
Sbjct: 264 RYLLHTFMHSQSAQMRKRVAQYMRASPCPVCEGKRLKRQALTVTFAGLDIAELSHLPLLE 323

Query: 438 ACE---------YFGVLKLTG----------------RRGE------------------- 453
             E         Y    + TG                 RG+                   
Sbjct: 324 LAEVLKRVLAPDYLEQAEETGDVLSHQQTRKAREQRAARGDNPHAGGPDARHTPNLSLEK 383

Query: 454 --IADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQIGAGLVGVLYIL 511
              A +I  E+ ER+  L+++GL YL+L+RS  TLS GE QR+RLA+Q+ + L GV+Y+L
Sbjct: 384 RLAAQRIAAELLERIVTLIDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVIYVL 443

Query: 512 DEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIV 571
           DEPS GLH  D++ L G L+ L+  GN+V VVEHD D +R AD+++D+GP AG  GG ++
Sbjct: 444 DEPSAGLHPADSEALFGALQRLKAAGNSVFVVEHDLDTMRRADWLIDVGPDAGEQGGKVL 503

Query: 572 AEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKLALHLKGARGNNLRNVDLEIPI 631
             G P+ +   P+S T  YL G   +   + RTPR+    L L+G   NNL N+    P+
Sbjct: 504 YSGPPSGLGQVPESRTRAYLFGEEHVMARSPRTPRDW---LRLEGITRNNLDNLSAAFPL 560

Query: 632 GLLTCVTGVSGSGKSTLINNTLFPLSATALNGATTLEAAAHDSIK-------------GL 678
           G  T VTG+SGSGKS+L++  L  L    L  A+        S++             GL
Sbjct: 561 GCFTAVTGISGSGKSSLVSQALLDLVGAHLGQASPNAEPDEQSLEDEPVQTSGGRVSAGL 620

Query: 679 EHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGR 738
           E + ++V +DQ PIGRTPRSN ATYTGLF  +R+LFA   +++  G+  GRFSFNV  GR
Sbjct: 621 EAVRRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAATAQAQELGFDAGRFSFNVAKGR 680

Query: 739 CEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEARVF 798
           CE C+G+G + VE+ F+P +Y PC  C   RYN +TLE+ ++G +I + L++T+ +A   
Sbjct: 681 CETCEGEGFVSVELLFMPSVYAPCPTCHGARYNPQTLEVNWQGLNISQVLQLTVNQALEV 740

Query: 799 FDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEP 858
           F    A  R LQ L D+GL Y++LGQ AT LSGGEAQR+KL+ EL ++  G TLY+LDEP
Sbjct: 741 FAEQAAARRSLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRKARGATLYVLDEP 800

Query: 859 TTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVG 918
           T GLH  D+ +LL  L+RL + G+TVVV+EH++ V+  +DW++D+GP  GS+GG ++A G
Sbjct: 801 TNGLHPQDVDRLLVQLNRLVEDGHTVVVVEHDMRVVAQSDWVIDIGPGAGSQGGNVVACG 860

Query: 919 TPEQVSEMPQSHTGYYLKPLLERDR 943
            PE+V+   +S T  +LK  L+  R
Sbjct: 861 APEEVAACRESRTAEFLKRALQPGR 885



 Score =  135 bits (341), Expect = 9e-36
 Identities = 61/113 (53%), Positives = 89/113 (78%)

Query: 4   ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + +RGAR HNLKN+D+ +PRD L+V TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 20  VRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 79

Query: 64  FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG 116
            +  +  PDVD+IEGL PA++++Q+  + + RS++G++T +   +R+LY+R G
Sbjct: 80  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSMGSVTTLSSLIRMLYSRAG 132



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 612 LHLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFP------LSATALNGAT 665
           + ++GAR +NL+NVD++IP   L   TGVSGSGKS+L  +TL+         + A     
Sbjct: 20  VRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 79

Query: 666 TLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFA---GVPESRS 722
            ++      +  +E L   V + Q     + RS+  + T L + IR L++     P  + 
Sbjct: 80  LIDQVGVPDVDSIEGLPPAVALQQQRGTPSARSSMGSVTTLSSLIRMLYSRAGSYPADQP 139

Query: 723 RGYGPGRFSFNVKGGRCEACQGDGLI--KVEMHFLPD 757
             Y    FS N   G C+ C G G +    E   +PD
Sbjct: 140 MLYAED-FSPNTPQGACQECHGLGRVYEVTEASMVPD 175



 Score = 52.0 bits (123), Expect = 2e-10
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 2   DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           D + + G   +NL N+    P      +TG+SGSGKSSL    L  +    ++   S  A
Sbjct: 539 DWLRLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQAL-LDLVGAHLGQASPNA 597

Query: 62  RQFLSMMEKPDVDT--------IEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYA 113
                 +E   V T        +E +   + ++QK     PRS + T T ++D++R L+A
Sbjct: 598 EPDEQSLEDEPVQTSGGRVSAGLEAVRRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFA 657