Pairwise Alignments

Query, 319 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 333 a.a., transcriptional regulator, AraC family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  209 bits (532), Expect = 7e-59
 Identities = 124/315 (39%), Positives = 185/315 (58%), Gaps = 11/315 (3%)

Query: 4   VELGVLIYQGAQLAAVHGLTDLFGVANRIAAEHQSAQLPLLRVSHWQVDVTGKPARVFSS 63
           + + +L   G+  +AV+GL ++  +AN +  + +   LPL   S  +  VT    R+  +
Sbjct: 13  LNVAILALPGSLTSAVYGLEEMLLMANTLVLKEE--HLPL---SATRFVVT----RLSLA 63

Query: 64  HPGPEQPMMAVLVPPSIG-EFTEDQAPLALLEWIRQQHAAGTVLGGVCIGSIMLARSGLL 122
               +     V++PPSI  +F  + AP  L  W+++QHA G ++   C G+ +LA SGLL
Sbjct: 64  EISLDDTYQLVIIPPSIETDFYFNVAP-ELRIWLQRQHAQGAIVCSACAGAFVLAASGLL 122

Query: 123 DGRSATTHWSSAKSFAARYPAVRLEADKPIVDDGDLITTAGLMAWSELGLRLVDRLMGPS 182
           DG   TTHW    +F  +YP + L+ DK +V++GD+IT AG+M+W +LGL LV +     
Sbjct: 123 DGCKVTTHWGLVDAFQTQYPQLELDIDKIMVNEGDIITAAGMMSWLDLGLELVAQFCHVK 182

Query: 183 IAADTARFLVIEHSDSASQCGSNFAPILGHGDAAILKVQHWLQASGAVDVSLAAMAREAG 242
           +     + LVI+  +   +    F P   HGD AIL +Q+ LQ   A  +S+AA+A++  
Sbjct: 183 VMRQLGKHLVIDTGNREQRYYQQFLPRRDHGDQAILGLQNRLQTGYAQPISIAALAQQLC 242

Query: 243 LEERTFLRRFRNATGLKPTEYCQHLRVGKARQMLEFTNGTIDHIAWTVGYQDPSAFRATF 302
           + ERTFLRRF  ATGLKP EY Q LR+ KA  +LE  + + + IA  VGY+D SA R  F
Sbjct: 243 MGERTFLRRFVKATGLKPNEYLQKLRIQKACDLLENGSLSFETIAHQVGYEDVSACRKAF 302

Query: 303 KKITGLAPSDYRSRF 317
            +ITGL+PS +R RF
Sbjct: 303 TRITGLSPSAFRQRF 317