Pairwise Alignments

Query, 644 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  167 bits (423), Expect = 1e-45
 Identities = 116/369 (31%), Positives = 186/369 (50%), Gaps = 11/369 (2%)

Query: 280 AVQDAAGTLRWRIGMGLALVGLGVLLLIAIVL---GRRVVNRLKLLIAAMDDLAAGEGDL 336
           A+Q     L W+I + L LV   V+++ ++ +     + ++RL  L+A   +L+ G GDL
Sbjct: 214 AIQANTDQLNWKITLAL-LVCASVIIVASVTMLHVSFKPLSRLNTLVA---NLSQGNGDL 269

Query: 337 TKRVQISSKDEIGDMASAVNRFVDKLQPIVREAGDVAQRTGVEIGAMTLRNAGADAAAGL 396
           T+R+ + SKDEIG + +++N F++KLQ +  +  D ++   ++   + L N        L
Sbjct: 270 TQRLAVESKDEIGQICNSINLFIEKLQQMFIDVADSSKE--IDRAVVHLSNQARSNLNTL 327

Query: 397 QR--DEVAESLRALSQMADEAQAESHAMQAALQQVVDIRQATDENSRTSAEVGSLIEALA 454
            +   E  +++ A+ +M+  A + + +   A        +  DE+ +T  E  + +  L 
Sbjct: 328 NQHTQETEQAITAIEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLV 387

Query: 455 GQVQAGSQVIERLAQQSEQIEVVLTVIHGIAEQTNLLALNAAIEAARAGETGRGFAVVAD 514
            QV + ++ I R+++ ++QI  VL VI  IAEQTNLLALNAAIEAARAGE GRGFAVVAD
Sbjct: 388 NQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 447

Query: 515 EVRALASKTQSSTGDIQAHIVALQQGAREAVDTIGKAGRQASEGLLVLRDSVRLQQTVQA 574
           EVRALAS+TQ ST  I   +  L+      V  +        E        +     V  
Sbjct: 448 EVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTD 507

Query: 575 SVEQVHAAIGLATRAAEHQAQGAHAVRGRVEVIHAQAERAAQAVQETTASGKVLDGLAAQ 634
           SV +++    L   +A  Q Q  H V   +  I     +      + T+    L   +  
Sbjct: 508 SVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHA 567

Query: 635 LKASLGQFR 643
           L   +G+FR
Sbjct: 568 LSDVVGRFR 576