Pairwise Alignments

Query, 644 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  176 bits (445), Expect = 3e-48
 Identities = 119/357 (33%), Positives = 197/357 (55%), Gaps = 14/357 (3%)

Query: 294 MGLALVGLGVLLLIAIVLGRRVVNRLKLLIAAMDDLAAGEGDLTKRVQISSKDEIGDMAS 353
           +GL++VGL   ++   VL  R +  L+ +++++  +AAG GDLT R+++ S+DEIGD+A 
Sbjct: 214 IGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAK 273

Query: 354 AVNRFVDKLQPI---VREAGDVAQRTGVEIGAMTLRNAGADAAAGLQRDEVAESLRALSQ 410
           A N F+DKL P+   +R + +  +    E+   T + +       L+ D+V  ++  +S 
Sbjct: 274 AFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSA 333

Query: 411 MADEAQAESHAMQAALQQV-VDIRQATDENSRTSAEVGSLIEALAGQVQAGSQVIERLAQ 469
            A E  + +++   A++     I  A  E +     +G L+     +V   S  +  L+Q
Sbjct: 334 TAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVN----EVNQTSAAVGDLSQ 389

Query: 470 QSEQIEVVLTVIHGIAEQTNLLALNAAIEAARAGETGRGFAVVADEVRALASKTQSSTGD 529
           Q+ +I  VL VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR+LAS+TQ+ST +
Sbjct: 390 QAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKE 449

Query: 530 IQAHIVALQQGAREAVDTIGKAGRQASEGLLVLRDSVRLQQT---VQASVEQVHAAIGLA 586
           I   + AL QG  +AV ++  +  +  +  L   +SV+++++   +  +V  +H      
Sbjct: 450 IGEMLNALHQGVSKAVQSMNISQERGEKTAL---ESVQIKESLAGISKAVSLIHDMGIQT 506

Query: 587 TRAAEHQAQGAHAVRGRVEVIHAQAERAAQAVQETTASGKVLDGLAAQLKASLGQFR 643
             AAE Q+  A  +   +  I       +++ ++T +    L     Q+   +G F+
Sbjct: 507 ASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLSHSGQQMGTLVGHFK 563