Pairwise Alignments

Query, 644 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  173 bits (438), Expect = 2e-47
 Identities = 115/367 (31%), Positives = 186/367 (50%), Gaps = 8/367 (2%)

Query: 281 VQDAAGTLRWRIGMGLALVGLGVLLLIAIVLG---RRVVNRLKLLIAAMDDLAAGEGDLT 337
           +   A +L W     ++ VG+G+L++  +VL    +     L+ +  A++D+A G+GDLT
Sbjct: 267 IMSQATSLAW----WMSAVGVGLLVIFGLVLVAIFKMQFKDLERVALALNDIAEGDGDLT 322

Query: 338 KRVQIS-SKDEIGDMASAVNRFVDKLQPIVREAGDVAQRTGVEIGAMTLRNAGADAAAGL 396
            R+  + S DEIG +AS  NRFV++L  ++    ++A +   +    +   A       +
Sbjct: 323 VRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAKGSSASAADNSQRIEV 382

Query: 397 QRDEVAESLRALSQMADEAQAESHAMQAALQQVVDIRQATDENSRTSAEVGSLIEALAGQ 456
           Q+DEV     A+++MA   +  +   +   Q   +    ++   +   +    I  LA +
Sbjct: 383 QQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQKQVMQSQQSIRNLANE 442

Query: 457 VQAGSQVIERLAQQSEQIEVVLTVIHGIAEQTNLLALNAAIEAARAGETGRGFAVVADEV 516
           V    ++I  L + S++I  +L  I GIAEQTNLLALNAAIEAARAGE GRGFAVVADEV
Sbjct: 443 VDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 502

Query: 517 RALASKTQSSTGDIQAHIVALQQGAREAVDTIGKAGRQASEGLLVLRDSVRLQQTVQASV 576
           R L+ +T SST +IQA I  LQQ A +AV ++ ++   A   +     +      +  ++
Sbjct: 503 RVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVADANSASESLLQISKAI 562

Query: 577 EQVHAAIGLATRAAEHQAQGAHAVRGRVEVIHAQAERAAQAVQETTASGKVLDGLAAQLK 636
            ++         AAE Q      +    E I   +E  +   Q      + L  LAA L+
Sbjct: 563 NEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSAMVQSQELAHLAASLQ 622

Query: 637 ASLGQFR 643
             + +F+
Sbjct: 623 QEVSRFK 629