Pairwise Alignments

Query, 166 a.a., antitermination protein NusB from Pseudomonas simiae WCS417

Subject, 156 a.a., N utilization substance protein B from Vibrio cholerae E7946 ATCC 55056

 Score =  113 bits (282), Expect = 2e-30
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 14/153 (9%)

Query: 20  GKPSKNEKRRAARQLATQALYQRHLAGASLNEIEAQFRVDNDFTF--------------A 65
           G   K   RR ARQ A QA+Y   +   ++  IE QF     +                 
Sbjct: 2   GASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPET 61

Query: 66  DLPYFHDILHGVHAHLTEIDTALAPCLDLTIEELDPVELCVMRLSAWELLYRVDVPYRVV 125
           D+ YF D+L GV  +  E+D+ L P +   +++LD +EL ++RL+ +E+  R DVPY+VV
Sbjct: 62  DVSYFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVV 121

Query: 126 INEGIELAKVYGSTDGHKFVNGVLDKLAPRLRE 158
           INE IELAKV+ + D HKFVNGVLDK AP +R+
Sbjct: 122 INEAIELAKVFAAEDSHKFVNGVLDKAAPHVRK 154