Pairwise Alignments

Query, 525 a.a., transposase from Pseudomonas simiae WCS417

Subject, 537 a.a., transposase number 3 for insertion sequence ISRM26 from Sinorhizobium meliloti 1021

 Score =  246 bits (629), Expect = 1e-69
 Identities = 173/484 (35%), Positives = 245/484 (50%), Gaps = 22/484 (4%)

Query: 54  IEKLTHEIAQLKRFKFAKRSEQHSPAQAGLLDDLIDTDIAAIEAELEALQAKPASIETKQ 113
           I  LT  +  L+R +  KRSE+    + G+ D+ +      +E  L A++++      K 
Sbjct: 52  IANLTLIMKVLQRTQNGKRSER---LRLGVNDEQVSFAFEEVETGLSAIRSE-LDRAAKD 107

Query: 114 KPKRTALPPQFPRTLIHH-----EPDNTQCACGCALKRIGEDVSEKLDYTPGVFTVERHI 168
           KPKR   P +     +       EP+      G A   IGED SE+LD  P  F V    
Sbjct: 108 KPKRAPRPRKGFAAHLERIEEVIEPEIPAGCEGLAKVLIGEDRSERLDVVPPKFRVIVTR 167

Query: 169 RGKWVCDDCETLIQAPVPAQIIDKGIPTAGLLAQVMIAKYGDHLPLYRQEQIFGRAGLAI 228
           R K+     + ++QA  PA II+ G+PT  LLA + ++KY D LPLYRQE I+ R G+ I
Sbjct: 168 RPKYAFRGSDGVVQALAPAHIIEGGLPTERLLAYIAVSKYADGLPLYRQEAIYLRDGVEI 227

Query: 229 PRSTLAQWVGTCGVQLQPLVDALRGVVLGHNVVHADETPVQVLMPGAKKTHRAYVWAYAS 288
            RS +AQW+G  G +LQ L D +   V     + ADET +  L PG+ KT +A++WAYA 
Sbjct: 228 SRSLMAQWMGHLGFELQMLADYILERVKEGERIFADETTLPTLAPGSGKTTKAWLWAYAR 287

Query: 289 S----AFADIKAVVYDFTPSRAGEHARRFLQDWKGKLVCDDFGGY--------KASFSLG 336
                       V Y F  SR  +   R L  + G L  D +  Y        K   +  
Sbjct: 288 DDRPYGGTSPPMVAYRFEDSRGADCVTRHLSGFTGILQVDGYSAYTNLAKTRAKTGSNET 347

Query: 337 VTEIGCMAHARRKFFELHATNKSQLAEQALRYIQVLYEIEREVRDLEPDLRRRIRQEKAA 396
           V   GC AH RRKF++LH +  SQ A   +  +  L+ IE EVR  + D R   RQEK++
Sbjct: 348 VQLAGCWAHLRRKFYDLHISGVSQAATDTVLAMTELWRIEDEVRGKDADSRAARRQEKSS 407

Query: 397 PAMDVLHTWMIAQRERMHDGVAIAKAFDYSLKRWTALSRYLDDGAVPIDNNHAEQQIRPW 456
                L      +  ++      A+A  Y+L R  AL R+L DG + ID+N  E+ IRP 
Sbjct: 408 TTAASLFELWEKELGKVSGKSKTAEAIRYALTRREALERFLTDGRIEIDSNIVERAIRPQ 467

Query: 457 ALGRKNWLYAGSLRSGQRAAALMSLIQSAKLNGHDPYAYLKDVFTRLPT-QRASEIAELL 515
            + RKN L+AGS   G+  AA+ +L+Q+ K+NG DP  +L    TR+     ASEI  L+
Sbjct: 468 TITRKNSLFAGSEGGGRTWAAVATLLQTCKMNGVDPLDWLSQTLTRIAQGWPASEIEALM 527

Query: 516 PHNW 519
           P N+
Sbjct: 528 PWNF 531