Pairwise Alignments

Query, 525 a.a., transposase from Pseudomonas simiae WCS417

Subject, 550 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  281 bits (719), Expect = 4e-80
 Identities = 173/489 (35%), Positives = 260/489 (53%), Gaps = 25/489 (5%)

Query: 51  RTVIEKLTHEIAQLKRFKFAKRSEQHSPAQAGL-LDDL------IDTDIAAIEAELEALQ 103
           + ++EKL  ++   +R KF  +SE+  PAQ  L L+DL          IAA+E ++EA  
Sbjct: 53  KELVEKLEGQVHDYRRTKFGPKSEKLDPAQMELALEDLETAIAETQARIAAVEKKIEASA 112

Query: 104 AKPASIETKQKPKRTALPPQFPRTLIHHEPDNTQCACGCA-LKRIGEDVSEKLDYTPGVF 162
           + P  +  +++ K  ALP   PR     EP++  C CGC  + RIGED +E+LD  P  +
Sbjct: 113 SDPEKVAPRKERKARALPEHLPRVERVIEPESIVCPCGCGNMVRIGEDRTERLDRVPARY 172

Query: 163 TVERHIRGKWVCDDCET-LIQAPVPAQIIDKGIPTAGLLAQVMIAKYGDHLPLYRQEQIF 221
            V   IR K+ C    T ++QA  PA +++   PT  LLA++ ++K+ +H+PL RQ ++ 
Sbjct: 173 EVIVTIRPKYACPKGRTGVVQARAPAHLLEGSWPTEALLAEIAVSKHSEHMPLNRQAEVM 232

Query: 222 GRAGLAIPRSTLAQWVGTCGVQLQPLVDALRGVVLGHNV-VHADETPVQVLMPGAKKTHR 280
            R G+ I R+ LA W+G  G  + P+VD +   +L  +  ++ DET   VL PG  KT  
Sbjct: 233 ARHGVPIDRTVLADWMGRTGAAIAPVVDHMAKRLLWESTRLYVDETTAPVLDPGRGKTKT 292

Query: 281 AYVWAYASSAF----ADIKAVVYDFTPSRAGEHARRFLQDWKGKLVCDDFGGYKASFSLG 336
            Y+WA          +    VV+ + P R GE+A   L  + G +  D +GGY    +L 
Sbjct: 293 GYLWAVLRDDRGWNGSAPPGVVFHYRPGRKGEYAAEILDGFNGTIQVDAYGGYSHLATLD 352

Query: 337 VTEIG--------CMAHARRKFFELHATNKSQLAEQALRYIQVLYEIEREVRDLEPDLRR 388
              +G        C AH RRK  +    + S + ++AL  I  LY+IE  +R  +P+ RR
Sbjct: 353 --RVGGDPLKLAFCWAHGRRKLIKATPKSGSPIVDEALVRIAALYKIEDSIRGSDPEHRR 410

Query: 389 RIRQEKAAPAMDVLHTWMIAQRERMHDGVAIAKAFDYSLKRWTALSRYLDDGAVPIDNNH 448
            +RQ+ + P +     W+ AQ +R+     + KA  Y L R      +LDDG V ID+N 
Sbjct: 411 AVRQDLSLPLVGAFFAWLAAQAKRVSRKSDLGKALAYMLTRQDGFRLFLDDGHVDIDSNL 470

Query: 449 AEQQIRPWALGRKNWLYAGSLRSGQRAAALMSLIQSAKLNGHDPYAYLKDVFTRLPT-QR 507
            E  IR  A+ R+N L+AG    G+  A   SLI + K+NG +PYAYL D+FTRL     
Sbjct: 471 VENAIRRPAMNRRNALFAGHDEGGRNWARFASLIGTCKMNGVEPYAYLCDLFTRLANGHL 530

Query: 508 ASEIAELLP 516
           A +I  L+P
Sbjct: 531 AKDIDALMP 539