Pairwise Alignments

Query, 1203 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  216 bits (551), Expect = 8e-60
 Identities = 146/482 (30%), Positives = 259/482 (53%), Gaps = 22/482 (4%)

Query: 560  LQAQIKKRKRAETALSDQLSFSKTLIDGSPIALYVRDKAGKLVHCNRAYLEFLQITHEDV 619
            L    ++++ AE  + +Q   ++ ++D +P  +Y     GK +  N  +L+ + + + +V
Sbjct: 453  LSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEV 512

Query: 620  LGKTLPDAEILPVSLSAQYDQIYQN-SEQGAEPAFADLEIEVQGQPHRIYHWTLPFQSSA 678
            + K     EI P  ++ ++   +Q  ++Q +   +    ++  G    +  +   F   A
Sbjct: 513  IDKE--PQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDRA 570

Query: 679  GEFSGVIGGWLDISEREQLVEQLRVAKQAADEANESKSIFLASMSHEIRTPISALIGLIE 738
             + +G++G  LD++ER+++ ++LR AK+AAD  +++K  FLA+MSHEIRTP++A++G   
Sbjct: 571  DKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILG--- 627

Query: 739  MLRVRGGTPQQINDNLAVA--HESAQSLLSLIGDILDLSKIEAGAMVLSPRPTRLSELLH 796
            M  +   TP        V   +ESA++LL +I DILD SK+EAG + +      L ++L 
Sbjct: 628  MAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLD 687

Query: 797  SVHKLFEINARNKHLTFDLIIDVQDQHV----IIDALMLNQIIANLVSNAIKFTEQGFVQ 852
            +V  +  + A+ K + F  ++D+ D H+    I D L L Q++ NL  NA+KFT QG + 
Sbjct: 688  NVTAVVSLKAQEKGIEF--LMDI-DPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIV 744

Query: 853  LSLKQSPNDSESNLARYVIEVRDSGLGLNEQQKKAIFEPFVQVVSAPT-STRGTGLGLSI 911
            LS + S  + +    R+   V+D+G+G+ + +   +F+ F Q  ++ T    GTGLGLSI
Sbjct: 745  LSARVSQLNEQQVTLRFA--VKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSI 802

Query: 912  CMRLAQLLEAQLSVDSQPDKGSSFKLQFEAERTLPEDVQESTQPQAPAGMSLNILVAEDH 971
              +L +L+  Q++V S+  KGS+F  +F     L +                 +LV +D+
Sbjct: 803  SKQLVELMGGQITVHSEEGKGSTF--EFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDN 860

Query: 972  AANRLLLCQQLEYLGHNAIPCDDGETALAQWQAADPPFDLTITDCNMPHMDGYELTRRIR 1031
             + R +L   L  +  N +   +G  AL++ Q    PFD+   D NMP M+G EL  R++
Sbjct: 861  DSARHILDSLLTAMRFNVVTVSNGFEALSEIQ--QKPFDMLFVDWNMPGMNGIELLTRVK 918

Query: 1032 TL 1033
            TL
Sbjct: 919  TL 920



 Score = 74.3 bits (181), Expect = 6e-17
 Identities = 72/251 (28%), Positives = 109/251 (43%), Gaps = 22/251 (8%)

Query: 959  AGMSLNILVAEDHAANRLLLCQQLEYLGHNAIPCDDGETALAQWQAADPPFDLTITDCNM 1018
            AG SL  L+ ED+  N+ +    L+  G N +  + G+ AL + + AD  FDL + D  M
Sbjct: 990  AGQSL--LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHAD--FDLVLMDMQM 1045

Query: 1019 PHMDGYELTRRIRTLEQSRGLGLHPIFGLTANAQSHIIQDCLDAGMTQCLFKPIGIEILA 1078
            P MDG   T  IR   +   L   PI  +TANA +  I+ CL AGM   L KPI +    
Sbjct: 1046 PVMDGITATEHIRANPRWHSL---PIVAMTANAMAIDIERCLQAGMNDHLSKPIEV---- 1098

Query: 1079 EQIYAVTAQIERQVKAASTTGGELEKLRILCPDAYSPLVEELINTNRQDAARLEQMLI-- 1136
            ++ Y V     +     S +     K     P A  P +  L++  +     LEQ +   
Sbjct: 1099 DKFYQVLRHFLQVSDEQSFSSHSPNK-----PSASKPAMNALLDLPQLTGVDLEQAIFRI 1153

Query: 1137 -NNELKKISGLAHKIKGGA-QLADARNLIEA--CMQLESLAHLDDANACEEQIKTVIQIM 1192
              N+ +    L H I     +L     LIEA        +AH    +A    ++ + Q+ 
Sbjct: 1154 GGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLA 1213

Query: 1193 LSLEQELLETI 1203
              +EQ L + +
Sbjct: 1214 AEMEQSLEQQV 1224