Pairwise Alignments

Query, 1203 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  280 bits (716), Expect = 4e-79
 Identities = 254/846 (30%), Positives = 385/846 (45%), Gaps = 106/846 (12%)

Query: 284  ADRSPLELTSEELTWIENHKKIKVVLAASYAPLSFYDQNNRLQGLTADLLAILAQRTGLE 343
            AD  PL +TS++                +Y P  F D + +  G   DL ++  Q+TG  
Sbjct: 32   ADEPPLRVTSDD----------------NYPPYIFRDPSGQPVGYLVDLWSLWEQKTGRR 75

Query: 344  IDVVRSDSVSNMLKRLEDNQVDLIAALSIGDLRLNPSQYTRPYTVSPFVVITKRQ-SPIR 402
            + ++ +D      + + +N+ D+I  +     R    ++++PY   P  + +    S I 
Sbjct: 76   VQLIATDW-GRAQRLMAENEADVIDMIFHTAARDALYEFSQPYANLPVGIYSHSSISGIS 134

Query: 403  DLSELNGKRLAIPVGNPLTKWLQQQHPGVIQV-PVETAARGVELVSNGDVTASVHTQLGA 461
            +   L G  + + VG+   + LQ +  GV  +   +  A  +      ++      QL A
Sbjct: 135  NTDNLKGFLIGVQVGDACIEELQGK--GVTNLRQFKNYAEMIAAAMAEEIKLFCLDQLPA 192

Query: 462  DYFIKHHFRSDLM--ISGMVGPNPARIGMVVSTEDMPLKSIINKVLLEIPPEEFKTLSDR 519
            +Y++   +R DL             R        D    + + + +  I  EE   L  +
Sbjct: 193  NYYL---YRLDLQRQFRKSFDLYQGRFHRATRKGDTATLAAVERGMALISNEERAALEKK 249

Query: 520  WRNHAAPAVASSWSTYKSSVYKVIGVALLFLLA--FLIWNYYLQAQIKKRKRAETALSDQ 577
            W   A   V   +  Y    Y  +G+ALL +      +W   LQA +K+R      L  Q
Sbjct: 250  WMGSAIDYVP--YMPYAR--YFGLGLALLLVAGAGLALWVRVLQAAVKRRT---AELERQ 302

Query: 578  LSFSKTLIDGSPIALYVRDKAGKLVHCNRAYLEFLQITHEDVLGKTLPDAEILPVSLSAQ 637
             S   TL+ G P  L+++D+AG  + CN A+        E ++G+  P+ EI+  S    
Sbjct: 303  RSHLHTLLRGIPDPLWLKDEAGVFIACNPAF--------ERMMGR--PEQEIIGCS---- 348

Query: 638  YDQIYQNSEQGAEPAFADLEIEVQGQPHRIYHWTL---------------PFQSSAGEFS 682
             D  + + EQ       D ++ V G P     W                 P     G+  
Sbjct: 349  -DYDFVSREQADFFRDKDRQVLVAGTPQSNEEWITQADGSGQRLFETVKTPIVEPQGKVL 407

Query: 683  GVIGGWLDISEREQL------------------VEQLRVAKQAADEANESKSIFLASMSH 724
            GV+G   DI+ER++L                   E+L  A+ AA+ AN +KS FLA+MSH
Sbjct: 408  GVLGVARDITERKRLEAEVSNYSHHLEELVAERTEELARARDAANAANVAKSAFLANMSH 467

Query: 725  EIRTPISALIGLIEMLRVRGGTPQQINDNLAVAHESAQSLLSLIGDILDLSKIEAGAMVL 784
            EIRTP++A+IGL  +L+    +PQQ  D L    ++A  LLS+I DILDLSKIEA  +VL
Sbjct: 468  EIRTPMNAIIGLTHILKKGEPSPQQ-QDRLDKIDDAASHLLSIINDILDLSKIEAERLVL 526

Query: 785  SPRPTRLSELLHSVHKLFEINARNKHLTFDLIIDVQDQHVIIDALMLNQIIANLVSNAIK 844
              +P  L  ++  +  +    AR K +     +D    +++ D   L Q I N  SNA+K
Sbjct: 527  EEQPVELGRIVSHIFSMLAEGARKKDIVLKSEVDPLPPYLLGDPTRLTQAILNYASNAVK 586

Query: 845  FTEQGFVQLSLKQSPNDSESNLARYVIEVRDSGLGLNEQQKKAIFEPFVQVVSAPTSTR- 903
            FTE G V L +K           R+  EV D+G+G+  + +  +F PF Q     TS R 
Sbjct: 587  FTEWGSVTLRIKVLELTPADVFLRF--EVEDTGIGIAPEVQPLLFAPF-QQADGSTSRRF 643

Query: 904  -GTGLGLSICMRLAQLLEAQLSVDSQPDKGSSF----KLQF-EAERTLPEDVQESTQPQA 957
             GTGLGL I  RLAQ++     VDS+   GS+F    +L+  EA   LPED     +P +
Sbjct: 644  GGTGLGLVITRRLAQIMGGDAGVDSRLGFGSTFWFSARLKLGEARAALPED---GPRPDS 700

Query: 958  PAGMSLN------ILVAEDHAANRLLLCQQLEYLGHNAIPCDDGETALAQWQAADPPFDL 1011
              G  L       IL+AED + N+ +  + LEY G       DG  A+A  +    P+ L
Sbjct: 701  AEGELLQHYRGTPILLAEDDSINQEVARELLEYAGLRVDIAADGNEAVACLERGTTPYAL 760

Query: 1012 TITDCNMPHMDGYELTRRIRTLEQSRGLGLHPIFGLTANAQSHIIQDCLDAGMTQCLFKP 1071
             + D  MP MDG E TR IR L    G+   PI  +TANA     + CL+AGM   + KP
Sbjct: 761  VLMDMQMPGMDGLEATRHIRRLP---GMESLPIISMTANAFGEDRERCLEAGMNDFVPKP 817

Query: 1072 IGIEIL 1077
            +  E+L
Sbjct: 818  VNPEVL 823