Pairwise Alignments

Query, 323 a.a., tRNA delta(2)-isopentenylpyrophosphate transferase from Pseudomonas simiae WCS417

Subject, 308 a.a., tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  365 bits (938), Expect = e-106
 Identities = 184/311 (59%), Positives = 229/311 (73%), Gaps = 11/311 (3%)

Query: 5   PPAIFLMGPTAAGKTDLAIELTKVLPCELISVDSALVYRDMDIGTAKPSKALLAQYPHQL 64
           P  +FLMGPTA+GKT LA+EL +   CE+ISVDSAL+YR MDIG+AKPS   LA+ PH+L
Sbjct: 7   PKVVFLMGPTASGKTALALELAEKHNCEIISVDSALIYRGMDIGSAKPSAEELARGPHRL 66

Query: 65  IDIIDPSESYSAADFRTDALAAMADITARGNIPLLVGGTMLYYKALQEGLADMPPADAQV 124
           IDI DPSESYSAADFR DAL+ +  I + G  PLLVGGTM+Y+KAL EGL+ +P AD  +
Sbjct: 67  IDIRDPSESYSAADFRADALSEIEQIISMGKTPLLVGGTMMYFKALLEGLSPLPSADEVI 126

Query: 125 RAELEEEAARLGWQALHDQLASVDPISAARIHPNDPQRLTRALEVWRVSGQTMTEHRLKQ 184
           RA+++ EA   GW+ALHDQL  +DP+SA RIHPNDPQRL+RALEV+R+SG+++TE  + +
Sbjct: 127 RADIQAEADANGWEALHDQLREIDPVSAERIHPNDPQRLSRALEVYRISGKSLTELTMTK 186

Query: 185 SAQSADAGASGASQLPYTVANLAIAPANRQVLHERIAQRFTIMLEQGFVDEVVALRSRGD 244
           SA            LPY V   AIAP  R+VLHE I QRF IMLEQGF+DEV  L++R D
Sbjct: 187 SA-----------PLPYNVVQFAIAPRERKVLHELIGQRFRIMLEQGFIDEVAQLKARDD 235

Query: 245 LHPGLPSIRAVGYRQVWDHLDGKLTSAEMQERGIIATRQLAKRQFTWLRSWSDLHWLDSL 304
           LH  LPS+R VGYRQ W +LDG+     M E+ I ATRQLAKRQ TWLRSW +L+WL+S 
Sbjct: 236 LHLDLPSMRCVGYRQCWQYLDGEFDHDTMVEKAIAATRQLAKRQLTWLRSWPELNWLESG 295

Query: 305 DSDNLSRALKY 315
              NL   +++
Sbjct: 296 AEGNLVTLMRH 306