Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  148 bits (374), Expect = 2e-40
 Identities = 115/405 (28%), Positives = 187/405 (46%), Gaps = 32/405 (7%)

Query: 7   KQVENLTEPGTYEDGDGLRLVVKPTGRKSWLLRFQLAGRRREMGLGSFPEVSLKKARQAA 66
           K V+         DG GL L+VKP G K W  +++L G+     +GSFP+VSL +AR A 
Sbjct: 12  KSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLAEARTAR 71

Query: 67  SAKRSQLSDGIDPLAARDLERAAQREAERVSEAKKLK---FETLATEYRDAHGAMWSEKW 123
              R+ +  GI P  A + ++  QR  E ++E K+ +   F  +A  Y      +++   
Sbjct: 72  EKARALVKQGIHP--AHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVFAHSS 129

Query: 124 RKGWLRKLELYAFAHIGKLSAEDIGTPEVLKVLQPIWATKTRTADEVRGQIEQVLDAAKA 183
            +    ++  Y       +   DIG  ++  +L+   A     A  V+G +  + + A  
Sbjct: 130 YRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVV 189

Query: 184 RNLREGENPARWRGHLDNLLSRAEKKKARKREH----FEALR-WQDVPDLMIKLRANSTP 238
           R L E       RG L   +  +E K A  RE     ++ALR ++  P+  + LR     
Sbjct: 190 RGLVEANPIPSLRGLL--RVPASESKAAMTREQIQKFYQALRGYRGYPETALCLR----- 242

Query: 239 PSWAAQLLIMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKS 298
                 L+ +T+ R      A W+EFD E   W  P  +MK R   V PL+ + + ++K 
Sbjct: 243 ------LIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKD 296

Query: 299 IPR-DEGSAFLFPGQGKTGVMHAN----AVRTLLHGIGYEHITRHGFRSSFRDWAGECTH 353
           + R   G  +LFP +   G    N    A+R +  G G    T H +R++F  WA E   
Sbjct: 297 LQRITGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRG---TTPHCWRTTFSTWANENGF 353

Query: 354 YPREVCEMALAHDERDQTEGAYSRSDFLDKRRLLMNDWSKFINTA 398
            P +  E  LAH E ++    Y+++  LD+RR L+  W+ +++ A
Sbjct: 354 RP-DAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAA 397