Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  151 bits (381), Expect = 4e-41
 Identities = 115/385 (29%), Positives = 191/385 (49%), Gaps = 27/385 (7%)

Query: 20  DGDGLRLVVKPTGRKSWLLRFQLAGRRR--EMGLGSFPEVSLKKARQAASAKRSQLSDGI 77
           DG  L   V+P+  +SW  R++  G+ +   +  G++P++SL +AR+ A   R QL+DGI
Sbjct: 24  DGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMSLAEAREKALEARKQLADGI 83

Query: 78  DPLAARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWSEKWRKGWLRKLELYAFA 137
           DP  A++     +++A+ ++E +   F+ +A +++        EK  +G  RKLELYAF 
Sbjct: 84  DPQLAKE-----EQKAKTITE-QNATFKFVAEQWKATKEGQIKEKTLEGNWRKLELYAFP 137

Query: 138 HIGKLSAEDIGTPEVLKVLQPIWATKTRTADEVRGQIEQVLDAAKARNLREGENPARWRG 197
            +G +    +  P  +  L+PI         E +G +E V   A+  N  E  N A   G
Sbjct: 138 KLGSIPVSKLTAPMAIAALRPI---------ESQGLLETVKRTAQLMN--EIMNYAVNSG 186

Query: 198 --HLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTP--PSWAAQLLIMTSARA 253
             H + L    +  K  K  H +AL+  ++ DL+  +   +      +  +  + T  R 
Sbjct: 187 VIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTRFLIEWQLHTMVRP 246

Query: 254 HMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIPRDEGSA-FLFPGQ 312
           +    ARW+E D+    W +P ERMKM    V+PL  + + ++++I    G   F+FP  
Sbjct: 247 NEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGHREFIFPSS 306

Query: 313 GKTGV-MHANAVRTLLHGIGY-EHITRHGFRSSFRDWAGECTHYPREVCEMALAHDERDQ 370
               V   +      L  +G+ +  T HG R+       E    P +V E ALAH +++Q
Sbjct: 307 RNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEP-DVIEAALAHTDKNQ 365

Query: 371 TEGAYSRSDFLDKRRLLMNDWSKFI 395
              AY+R+D+LD RR LM+ WS+ I
Sbjct: 366 IRKAYNRTDYLDSRRKLMSWWSEHI 390