Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (358), Expect = 2e-38
 Identities = 114/392 (29%), Positives = 190/392 (48%), Gaps = 27/392 (6%)

Query: 20  DGDGLRLVVKPTGRKSWLLRFQLA--GRRREMGLGSFPEVSLKKARQAASAKRSQLSDGI 77
           DGDGLRL +KP G K W+  +     G+R  +  G +P++SL +AR++  + +  ++ GI
Sbjct: 27  DGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDISLLQARKSLLSAKELIAQGI 86

Query: 78  DPLAARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWSEKWRKGWLRKLELYAFA 137
           DP   R  ++   +E    +     K +  A +  D       + WR      LEL+ F 
Sbjct: 87  DPQDDRKRQQQVHKEIHEHTFENVTK-DWFAIKQNDVTPDYALDIWRS-----LELHIFP 140

Query: 138 HIGKLSAEDIGTPEVLKVLQPIWATKT-RTADEVRGQIEQVLDAAKARNLREGENPARWR 196
           HI     + I  PE++++L+PI A  +  T   +  ++ +V++ A    L +  NP    
Sbjct: 141 HISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATNCGLIQA-NPLTG- 198

Query: 197 GHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTPPSWAAQLL---IMTSARA 253
                 +  A KK   K+E+  AL   ++P+LM  + AN++       LL   + T  R 
Sbjct: 199 ------IKAAFKKP--KKENMAALTPAELPELMSAI-ANASIKRTTRCLLEWQLHTMTRP 249

Query: 254 HMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIPRDEGSA-FLFPG- 311
                ARWDE + E   W++P ERMK R    IPL E+++ L++ +    G   F+FP  
Sbjct: 250 AEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIFPSD 309

Query: 312 QGKTGVMHANAVRTLLHGIGYE-HITRHGFRSSFRDWAGECTHYPREVCEMALAHDERDQ 370
           +      ++      L  +G+   +  HG RS       E    P ++ E ALAH + +Q
Sbjct: 310 RAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDP-DLVESALAHVDDNQ 368

Query: 371 TEGAYSRSDFLDKRRLLMNDWSKFINTAIKAS 402
              AY+R+D+L++R+ +M  WS+ I  A + S
Sbjct: 369 VRSAYNRTDYLERRKPMMCWWSEHIEEAARGS 400