Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (341), Expect = 2e-36
 Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 31/403 (7%)

Query: 7   KQVENLTEPGTYEDGDGLRLVVKPTGRKSWLLRFQ--LAGRRREMGLGSFPEVSLKKARQ 64
           KQ +   +  T  DGDGL+L VK  G K W+L++   +  +R  +  G FP+VSL +AR+
Sbjct: 14  KQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARK 73

Query: 65  AASAKRSQLSDGIDPLAARDLERAAQR-EAERVSEAKKLKFETLATEYRDAHGAMWSEKW 123
             S  ++ L+  IDP   +D +   +R E E        ++ TL  E      ++  E  
Sbjct: 74  RRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE------SVKPETA 127

Query: 124 RKGWLRKLELYAFAHIGKLSAEDIGTPEVLKVLQPIWATKT-RTADEVRGQIEQVLDAAK 182
            K + R LE +    +G +  +DI    VL +L+P+ A  T  T   +   I +V+  A 
Sbjct: 128 DKAY-RALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAV 186

Query: 183 ARNLREGENPARWRGHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTPPSWA 242
           A     G+    +   +  L        A KR+H   +  + +P+LM  + AN+      
Sbjct: 187 A----SGDIEVNYLADITKLFP------APKRQHMVTIEPERLPELMQAI-ANANITLAT 235

Query: 243 AQLL---IMTSARAHMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSI 299
             LL   + T  R      ARW + D +   W +P ERMKM+    IPL E+ + L++ +
Sbjct: 236 RCLLEWQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIM 295

Query: 300 -PRDEGSAFLFPGQGKTGVMHANA--VRTLLHGIGYE-HITRHGFRSSFRDWAGECTHYP 355
            P      ++FP   K    H N+      L  +GY+  +  HG R+       E    P
Sbjct: 296 KPISSHREYIFPSN-KNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNP 354

Query: 356 REVCEMALAHDERDQTEGAYSRSDFLDKRRLLMNDWSKFINTA 398
            ++ E ALAH ++++   AY+R+++L++RR LM+ WS  I +A
Sbjct: 355 -DIIEAALAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSA 396