Pairwise Alignments

Query, 404 a.a., integrase from Pseudomonas simiae WCS417

Subject, 415 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (364), Expect = 4e-39
 Identities = 122/395 (30%), Positives = 193/395 (48%), Gaps = 33/395 (8%)

Query: 20  DGDGLRLVVKPTGRKSWLLRFQ--LAGRRREMGLGSFPEVSLKKARQAASAKRSQLSDGI 77
           DG GL++ +KP G K WLL +   +  +R+ + LG++P++SL  AR+ A   R+ L+ G 
Sbjct: 27  DGGGLQIRIKPNGSKLWLLNYSHPITKKRQNLSLGTYPDISLLSARKLAQEARTLLAHGT 86

Query: 78  DPLAARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWSEKWRKGWLRKLELYAFA 137
           DP A R+ + AA+      +   +  F  +A E+ +      +E       R  +L+   
Sbjct: 87  DPKAHREAQIAAK------AAIIEHTFGKIAAEWFERKKDEVTEDHAAATWRSFKLHLLP 140

Query: 138 HIGKLSAEDIGTPEVLKVLQPIWAT-KTRTADEVRGQIEQVLDAAKARNLREGENPARWR 196
            +  +    I  P V++ L+PI A     T   +  ++ +V+  A    L    NP    
Sbjct: 141 SLKDIPISQITAPMVIEFLRPIEAKGNLETVKRLTQRLNEVMIYAVNTGLIHA-NP---- 195

Query: 197 GHLDNLLSRAEKKKARKREHFEALRWQDVPDLMIKLRANSTPPSWAAQLL---IMTSARA 253
             L  +  +A  KK RK EH  AL+  ++P+LM  + AN++       L+   + T  R 
Sbjct: 196 --LSGI--KAIFKKPRK-EHLAALKPDELPELMQAI-ANASIKKVTRFLIEWQLHTMTRP 249

Query: 254 HMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIPRDEGSA-FLFPG- 311
           +    ARWDE + +   W +P  RMKMR    IPL E+ + L+ +I    G   ++FP  
Sbjct: 250 NEAAAARWDEINFDERIWLIPAARMKMRRDHQIPLTEQTLALLAAIKPISGHREYIFPAD 309

Query: 312 ---QGKTGVMHANAVRTLLHGIGY-EHITRHGFRSSFRDWAGECTHYPREVCEMALAHDE 367
              +  + V  ANA    L  +G  +  T HGFRS       E    P +V E ALAH +
Sbjct: 310 RDPKTHSNVQTANAA---LKRMGLKDRTTAHGFRSLASTTLNEQGFDP-DVIEAALAHTD 365

Query: 368 RDQTEGAYSRSDFLDKRRLLMNDWSKFINTAIKAS 402
           ++Q   AY+RS +LD+RR +M  WS +I  A K +
Sbjct: 366 KNQVRSAYNRSIYLDRRREMMTWWSNYIVEAAKGN 400