Pairwise Alignments

Query, 473 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 439 a.a., N-acetylmuramoyl-L-alanine amidase (RefSeq) from Shewanella loihica PV-4

 Score =  335 bits (858), Expect = 2e-96
 Identities = 204/458 (44%), Positives = 273/458 (59%), Gaps = 38/458 (8%)

Query: 12  VLLAAMTVNALAASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPDRLVIDINGATL 71
           VLL   +V A +A++++ VR+W AP++TR+VFDL  P ++S FTLT+P RLV+D+     
Sbjct: 15  VLLCIPSV-AYSANKLEGVRIWAAPESTRVVFDLREPPKYSHFTLTSPYRLVVDLTTTAT 73

Query: 72  AAPLKVSTANTPITAMRSAQRTPT--DLRVVIDLKKVVTPKSFSLAPNAQYGNRLVVDLF 129
              L     N+ +       + P    LR+VIDL K      F+L+P A YGNRLVVDL 
Sbjct: 74  GLDLNKIENNSKLVKRVRISKPPKKGTLRLVIDLVKPAKANLFALSPTAPYGNRLVVDL- 132

Query: 130 DNAADANPPPAPPPSVATVPAVPVNPSQPQVKLPPPPPAPAGKRDIIVVIDAGHGGEDPG 189
                 N  P           V V P Q   KL          RDIIV IDAGHGG+DPG
Sbjct: 133 ---EGGNQSP---------KTVKVEPEQ---KL----------RDIIVAIDAGHGGDDPG 167

Query: 190 ASGSRGQHEKDVVLAIARELQRQINAMKGYRAELTRTGDYFIPLRGRTEIARKKGADLFV 249
           + G  G +EK V L IA++++ +INA  G RA +TR+GDYF+ L  R+EIAR   ADL V
Sbjct: 168 SIGPSGIYEKKVALQIAKKVEAKINATPGMRAIMTRSGDYFVNLNKRSEIARNSKADLLV 227

Query: 250 SIHADAAPSAAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNVSLD-DKDKMLA 308
           SIHADA  S    GASV+ LS R A SE  RWL   E  S+L+GGAG +  + D ++ LA
Sbjct: 228 SIHADAFTSPQPQGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNADNEQYLA 287

Query: 309 GVLLDLSMTASLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSILVETGFI 368
             LLD+SM  S+  S N+   VL+N+G+VT LHK + E A   VLKSPDIPSILVETGFI
Sbjct: 288 MTLLDMSMDRSMAISHNIAGDVLANLGKVTRLHKHKPEAASLAVLKSPDIPSILVETGFI 347

Query: 369 SNSNEASKLATGSHQQALARSISAGVRQFFQQNPPPGTYIAWLRDSGKIAQGPRDHRVQP 428
           SN  E   L    HQ  +A ++  GV ++F+ NPP  T +A        ++    H+V  
Sbjct: 348 SNHKEERLLTQRDHQNNIANAVHKGVVRYFENNPPANTMMA--------SKSGIKHKVTA 399

Query: 429 GDTLAMLAVRFQVSAATLRSANNLKTDELKVGQVLTIP 466
           G++L+++A R+QVS  +++ AN LK++ L +GQ L IP
Sbjct: 400 GESLSVIAHRYQVSVDSIKKANKLKSNTLYIGQKLIIP 437