Pairwise Alignments

Query, 184 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 514 a.a., conserved domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 47.4 bits (111), Expect = 4e-10
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 44  PDSQAEALSACQKQADGGDAQAQYELGEYFHDSKNPARDLNKALSYFEKASLQGHAQAQF 103
           PD+ ++A+   +K A     +A Y LG  + D +    D NKA  YFEKA   G   A+ 
Sbjct: 159 PDA-SQAIYWFEKAAAQNKQEANYHLGTLYKDDERITSDYNKARKYFEKAVAAGDELAKD 217

Query: 104 ELGNMFFKGEGVPANNVQAYIVLKMAAVNGAED 136
            L +M   G+G P + V+A  +L   A   AED
Sbjct: 218 NLAHMLATGQGGPKDLVRAEHLLSEYA---AED 247



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 26/96 (27%), Positives = 45/96 (46%)

Query: 44  PDSQAEALSACQKQADGGDAQAQYELGEYFHDSKNPARDLNKALSYFEKASLQGHAQAQF 103
           PD     +   +  A+ G A+ QYEL   +        D ++A+ +FEKA+ Q   +A +
Sbjct: 122 PDELIAQVEQLKPNAEAGQAEFQYELAYLYLRQPFLDPDASQAIYWFEKAAAQNKQEANY 181

Query: 104 ELGNMFFKGEGVPANNVQAYIVLKMAAVNGAEDALD 139
            LG ++   E + ++  +A    + A   G E A D
Sbjct: 182 HLGTLYKDDERITSDYNKARKYFEKAVAAGDELAKD 217



 Score = 30.8 bits (68), Expect = 4e-05
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 36/138 (26%)

Query: 66  QYELGEYFHDSKNPARDLNKALSYFEKASLQGHA-------------------------- 99
           QY LG+ F   ++ A D +KA  + EK+S  G+                           
Sbjct: 251 QYYLGKRFLYGEDFAVDYDKARHWLEKSSAAGNVFAKLALAHLKLLAQKNDQDYLQARTE 310

Query: 100 ----------QAQFELGNMFFKGEGVPANNVQAYIVLKMAAVNGAEDALDTADEVAEHMQ 149
                     +A F LG ++ +G GV    ++A +  ++AA++   D L   D++++ + 
Sbjct: 311 FEALAPQWQEEALFGLGKIYEEGLGVSRQPIKALMYYQLAAMSHNTDYLTAYDKLSKRLG 370

Query: 150 RDELEVATQVLGQIFRNY 167
             E+  A  +       +
Sbjct: 371 TLEIREAQSLCNNFLHQH 388



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 20  LAHAQAGGNSLLIPAMGRCTLNTQPDSQ--AEALSACQKQADGGDAQAQYELGEYFHDSK 77
           L  + A GN     A+    L  Q + Q   +A +  +  A     +A + LG+ + +  
Sbjct: 275 LEKSSAAGNVFAKLALAHLKLLAQKNDQDYLQARTEFEALAPQWQEEALFGLGKIYEEGL 334

Query: 78  NPARDLNKALSYFEKASLQGHA-------------------QAQFELGNMFFKGEGVPAN 118
             +R   KAL Y++ A++  +                    +AQ  L N F     +P N
Sbjct: 335 GVSRQPIKALMYYQLAAMSHNTDYLTAYDKLSKRLGTLEIREAQ-SLCNNFLHQHPIP-N 392

Query: 119 NVQAYIVLKMAAV-----NGAEDALDTADEVAEHMQRDELEVATQVLGQIFRNYLQE 170
             QAY  L  A +     + + + L TA+           + A Q L +I+R+ L +
Sbjct: 393 EQQAYYYLNQAEIYRKGDHPSREGLQTAETWYRKSADLGNQNAMQALVEIYRHELMD 449