Pairwise Alignments

Query, 204 a.a., putative transporter, required for glycine utilization (from data) from Pseudomonas simiae WCS417

Subject, 206 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  138 bits (348), Expect = 6e-38
 Identities = 76/198 (38%), Positives = 115/198 (58%), Gaps = 1/198 (0%)

Query: 1   MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLLGHYPLTWVKH 60
           +L ++ +      A++G L AGR  MD FGV+++A VTA+GGG++RD+ LG  P+ W+K 
Sbjct: 5   LLYLIDMFGTAVFAVSGVLLAGRLKMDPFGVMVLASVTAIGGGTIRDMALGATPVFWIKD 64

Query: 61  PEYLVLTSIAALVTIFIAPLMRRLRSLFLAL-DAVGLVAFTLIGCMTALEMGHGMLVASV 119
             YL +  I   +T+ +    +RL    L + DA+GL  F  IG   AL      L+A +
Sbjct: 65  TNYLWVIMITCALTMLLVRRPKRLAWWILPVCDAIGLAVFVGIGVEKALIYQDSALIAII 124

Query: 120 SGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWFYMLCLYLELPSEQAILLTLFS 179
            GVITG  GGI+RD+   +IP++ R E+YA+   +   F+   L +   S  A+L  +FS
Sbjct: 125 MGVITGCGGGIIRDVLAREIPMVLRSEVYATACIIGGIFHTTALAMGYSSSTALLSGVFS 184

Query: 180 GFLLRLLAIRFHWEMPKF 197
             L+RL AIR+H  +P F
Sbjct: 185 TLLIRLGAIRWHLSLPTF 202



 Score = 26.6 bits (57), Expect = 3e-04
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 86  SLFLALDAVGLVAFTLIGCMTALEMGHGMLVASVSGVITGVFGGILRDIFCNDIPLIFRR 145
           SL   +D  G   F + G + A  +        V   +T + GG +RD+     P+ + +
Sbjct: 4   SLLYLIDMFGTAVFAVSGVLLAGRLKMDPFGVMVLASVTAIGGGTIRDMALGATPVFWIK 63

Query: 146 EL-YASVSFLAAWFYMLCL-------YLELPSEQAILLTLFSG 180
           +  Y  V  +     ML +       +  LP   AI L +F G
Sbjct: 64  DTNYLWVIMITCALTMLLVRRPKRLAWWILPVCDAIGLAVFVG 106