Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase from Pseudomonas simiae WCS417

Subject, 1303 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  250 bits (639), Expect = 3e-70
 Identities = 170/474 (35%), Positives = 254/474 (53%), Gaps = 35/474 (7%)

Query: 2   NSLPIDEVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLN----EPWLAGQTILMLEP 57
           ++LPI      ++DAL      ++    G+GKTT++P   L     +  L G T    +P
Sbjct: 70  DNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHT----QP 125

Query: 58  RRLAARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDG 117
           RR+AAR+ A R+A EL   +G  VGY++R + +   NT I+++T+GIL    Q+D  L+ 
Sbjct: 126 RRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQNDRYLER 185

Query: 118 VGLLIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLAGLLDNAPIL 177
              +I DE HERSL+ D  L      + L      LK+++ SAT++ ER +   D+API+
Sbjct: 186 YDTIIVDEAHERSLNIDFLLGYL---KTLLPRRPDLKVIITSATIDLERFSKHFDDAPIV 242

Query: 178 RSEGRMFPVQMRWGRPY-----QPGEFIEP--RVVQTVLDALQD----------ETGSVL 220
              GR FPV+  W RP      + G  +E    V Q +L  L +            G VL
Sbjct: 243 EVSGRTFPVET-WYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVL 301

Query: 221 VFLPGQAEIRRVNQQLADALGERADVVLCPLHGELDLNAQRAAIDPAPVGKRKVVLATNI 280
           VFLPG+ EIR   + L  A  +  +++  PL+  L    Q+      P   R+VVLATN+
Sbjct: 302 VFLPGEREIRDAAEMLRKAQLKHTEIL--PLYARLSPAEQQRIFQSHP--GRRVVLATNV 357

Query: 281 AETSLTINGVRVVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYR 340
           AETSLT+ G+R VID+G AR+ R+   + + RL  + IS+ASA QR GR GR+EPG+C R
Sbjct: 358 AETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVR 417

Query: 341 LWSEDQHEGLAAYGSAEILAADLAGLALQLARWGVTP-TQLVWLDVPPTAAYAQAQDLLG 399
           L+SE+   G   +   EIL  +LA + LQ+    +   T   +++ P   A +   +LL 
Sbjct: 418 LYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQ 477

Query: 400 RLGALD-EEKLTAHGQKMAELPAHPRIAHLLLRGQALGLAATACDVAALLGERD 452
            L A+D   +LT  G+++A LP  PR+  +LL    LG       VA+ +  +D
Sbjct: 478 ELSAVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQD 531