Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase from Pseudomonas simiae WCS417

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score =  243 bits (621), Expect = 4e-68
 Identities = 157/468 (33%), Positives = 250/468 (53%), Gaps = 33/468 (7%)

Query: 4   LPIDEVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLN----EPWLAGQTILMLEPRR 59
           LP+ +    +  A+A+    ++    G+GKTT++P         +  L G T    +PRR
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHT----QPRR 142

Query: 60  LAARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVG 119
           LAAR+ A R+A E+  ++G  VGY++R   ++   T+I+++T+GIL   +Q+D  L+   
Sbjct: 143 LAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYD 202

Query: 120 LLIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLAGLLDNAPILRS 179
            +I DE HERSL+ D  L      ++L      LK+++ SAT++ ER +    NAPI+  
Sbjct: 203 TIIIDEAHERSLNIDFILGYL---KQLLPRRPDLKVIITSATIDPERFSKHFSNAPIIEV 259

Query: 180 EGRMFPVQMRWGRPYQPGEFIEPR------VVQTVLDALQDETGSVLVFLPGQAEIRRVN 233
            GR +PV++R+ RP    +  E        + Q V +   +  G +L+F+ G+ EIR   
Sbjct: 260 SGRTYPVEVRY-RPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIR--- 315

Query: 234 QQLADALGER--ADVVLCPLHGELDLNAQRAAIDPAPVGKRKVVLATNIAETSLTINGVR 291
              ADAL +R   D  + PL+  L    Q     P     R++VLATN+AETSLT+ G++
Sbjct: 316 -DTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPH--AGRRIVLATNVAETSLTVPGIK 372

Query: 292 VVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLA 351
            VID G AR+ R+   + + RL  + IS+ASA QR GR GR E G+C RL+SE+      
Sbjct: 373 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRP 432

Query: 352 AYGSAEILAADLAGLALQLARWGVTPTQ-LVWLDVPPTAAYAQAQDLLGRLGALDEE--- 407
            +   EIL  +LA + LQ+   G+   +   +++ P          LL  LGA++++   
Sbjct: 433 EFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKD 492

Query: 408 ---KLTAHGQKMAELPAHPRIAHLLLRGQALGLAATACDVAALLGERD 452
              +LT  G+++A LP  PR+A ++L    LG       +A+ L  +D
Sbjct: 493 PKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540