Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase from Pseudomonas simiae WCS417

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  646 bits (1666), Expect = 0.0
 Identities = 379/839 (45%), Positives = 519/839 (61%), Gaps = 31/839 (3%)

Query: 1   MNSLPIDEVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTILMLEPRRL 60
           M+ LPI EV+P L   + N  + +L+A PGAGK+T  PL LL      G+ I+MLEPRRL
Sbjct: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGK-IIMLEPRRL 59

Query: 61  AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL 120
           AAR  A  LA +LGE+VG+ VGYR+R +++V   T++E+VTEGI+TR LQ+DP LDGV +
Sbjct: 60  AARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDV 119

Query: 121 LIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLAGLLDNAPILRSE 180
           LIFDEFHERS+ AD ALAL+L  +   R+D  LKI++MSATL+ + L  LL  A  + S+
Sbjct: 120 LIFDEFHERSIHADTALALALEVQSALRED--LKIVVMSATLDQQALQNLLPQASYVESQ 177

Query: 181 GRMFPVQMRWGRPYQPGEFIEPRVV---QTVLDALQDETGSVLVFLPGQAEIRRVNQQLA 237
           GR FP+++R    YQP    EP V    + +   LQ ETGS+L FLPG A I ++ +QL+
Sbjct: 178 GRGFPIEIR----YQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLS 233

Query: 238 DALGERADVVLCPLHGELDLNAQRAAIDPAPVGKRKVVLATNIAETSLTINGVRVVIDAG 297
           D   E   V +CPL+G+++  AQ+ AI P   G+RKVVLATNIAETSLTI G+R+V+D+G
Sbjct: 234 DLASE---VEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSG 290

Query: 298 LARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAE 357
           L R  RFD  +G+TRL+  RI+++SA QRAGRAGRLEPG+C RL+SE Q +        E
Sbjct: 291 LERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPE 350

Query: 358 ILAADLAGLALQLARWGVTPTQLVWLDVPPTAAYAQAQDLLGRLGALD-EEKLTAHGQKM 416
           +L  DLA LAL+LA+WG  P+ L WL++PP++A+AQAQ LL RLG LD   ++TA G++ 
Sbjct: 351 MLHTDLAPLALELAQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEA 410

Query: 417 AELPAHPRIAHLLLRGQALGLAA--TACDVAALLGERDILRGGGADLHSRLALLSGEERA 474
             L   PRIA +LL    LG +A  +A  +  LL E +           R  +       
Sbjct: 411 HLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPE-----------RQVIDVQHSLH 459

Query: 475 RGTQGGVQRAKQLARQYRGYLRGQATQPVADPDHPRWLGALLALAYPDRVAQQRRPGGAE 534
           R  QG   + K L ++ +       T          WL  +  LA+PDR+AQQR     +
Sbjct: 460 RWQQGRHPKQKLLIQRAQSLAHKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQ 519

Query: 535 YRLANGRAALFAEADSLMKQAWLVIADLGSRQGQREERIYLAADFDPALFDTVLAEQVRN 594
           + LANG  A  A  D L    +LV  DL   Q Q  + I+ A + D    + VL   +  
Sbjct: 520 FLLANGHGAWLAVEDRLSAADYLVALDLMRGQTQASQ-IFSALELDIHALERVLPALISR 578

Query: 595 VDQLDWDEREGVLRAERQRKVGELVLSREPLTGLDESARSQALVNLVRRKGLELLPWTPE 654
           V+Q+DWDE+ G L AE Q ++ +LVL RE L   D+   +QAL++ VRRKGL +L W+ +
Sbjct: 579 VEQVDWDEKAGRLSAEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSED 638

Query: 655 LRQWQARVMLLRQLDAGKTSEWPDLSDKALLASLEHWLMPYLGKVSRLSHFANLDISSFL 714
             +W AR     +    +   WP L D+ LLA LE WL PYL  V+ +    ++ +   L
Sbjct: 639 ASEWLARARCAAEWLPEEA--WPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQAL 696

Query: 715 HNLLPWPLPQRLDELAPQHVKVPSGSSVRLDYS-EQPPILAVRLQELFGLADTPRIASGR 773
            + L W L Q+LDE  P H  +P+G+  ++ Y     P L+VR+QE+FG   +PR+A G 
Sbjct: 697 KHYLGWELSQQLDEWLPTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGT 756

Query: 774 VAVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIK 832
            AV + LLSPA+RP+QVT+DLA+FW   Y EV+K++KGRYPKH WPDDP    AT++ K
Sbjct: 757 RAVVMELLSPAQRPLQVTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815