Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase from Pseudomonas simiae WCS417

Subject, 835 a.a., ATP-dependent helicase HrpB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  659 bits (1700), Expect = 0.0
 Identities = 388/836 (46%), Positives = 530/836 (63%), Gaps = 34/836 (4%)

Query: 1   MNSLPIDEVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTILMLEPRRL 60
           MN+LPI  +LP+LRDA A   + +LEAP GAGK+T +PLA+L+   ++G+ ILMLEPRR+
Sbjct: 1   MNNLPIHSLLPSLRDAFATHAQVILEAPTGAGKSTALPLAMLDWAEISGR-ILMLEPRRV 59

Query: 61  AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL 120
           AAR+ A+ +AS   + VG+ VG+R+R ++KV  +TR+E+VTEGILTR +Q DP L G+ +
Sbjct: 60  AARSVAQFIASCRQQAVGQEVGFRVRGEAKVSRDTRLEIVTEGILTRMIQQDPELTGIDM 119

Query: 121 LIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLAGLLDNAPILRSE 180
           +IFDE HER L  DL LAL+L  +   RDD  LKIL MSATL G  L+ L+  A +L+SE
Sbjct: 120 IIFDEIHERHLTTDLGLALALEVQSSLRDD--LKILAMSATLSGLALSELMPYAALLKSE 177

Query: 181 GRMFPVQMRWGRPYQPGEFIEPRVVQTVLDALQDETGS----VLVFLPGQAEIRRVNQQL 236
           GR FPV++ +        +++  + +TVLD+    T S    +LVFLPG+AEI RV Q L
Sbjct: 178 GRTFPVEIIYRAVAGQQHWLD-HLSRTVLDSAASITDSGPQDILVFLPGKAEILRVAQYL 236

Query: 237 ADALGERADVVLCPLHGELDLNAQRAAIDPAPVGKRKVVLATNIAETSLTINGVRVVIDA 296
           A+ L + + V +CPL+GEL    Q  AI     G+RK+VL+TN+AE+SLTI G+ +VID+
Sbjct: 237 AERL-DGSRVAICPLYGELSAQEQDRAIKADASGRRKIVLSTNVAESSLTIEGIGLVIDS 295

Query: 297 GLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSA 356
           G  R   F+P +G+TRL  +RIS+ASATQRAGRAGRL  GVC RLW +++H+ L      
Sbjct: 296 GYKRQASFNPKTGVTRLSLKRISQASATQRAGRAGRLAAGVCIRLWGQEEHQRLLKADEP 355

Query: 357 EILAADLAGLALQLARWGVTP-TQLVWLDVPPTAAYAQAQDLLGRLGALD-EEKLTAHGQ 414
           EI  ADL  +A   A WG    + L+ L  PP+   A A  LL RL  +D + KLTAHG+
Sbjct: 356 EISQADLVSMAHDCAYWGAKSFSDLLLLTAPPSVNEALAWQLLRRLDVVDGQNKLTAHGK 415

Query: 415 KMAELPAHPRIAHLLL--RGQALGLAATACDVAALLGERDILRGGGADLHSRLALLSGEE 472
              EL  HPR+AH+LL  +  +  LAA AC +A +L  R + R  GAD+ + L       
Sbjct: 416 AAYELGCHPRLAHMLLAAKSHSTELAALACLLAGILEARGLPR-KGADIMNYLHF----- 469

Query: 473 RARGTQGGV-QRAKQLARQYRGYLRGQATQ----PVADPDHPRWLGALLALAYPDRVAQQ 527
               TQG   Q+AKQ  R+    L  + TQ     +A   H R +G LLALAYPDR+A+ 
Sbjct: 470 ---ATQGSAGQQAKQWLRKLA--LDSKFTQADLGAIASHAHHRDVGLLLALAYPDRIAKS 524

Query: 528 RRPGGAEYRLANGRAALFAEADSLMKQAWLVIADLGSRQGQREERIYLAADFDPALFDTV 587
           R  G   Y+LANG   + +  D+L +  WLV+AD    +G+   R+YLA    P+LFD  
Sbjct: 525 R--GVEGYQLANGTGVVLSAEDALAQTPWLVVADFQETEGKTAGRVYLACPLQPSLFDHE 582

Query: 588 LAEQVRNVDQLDWDEREGVLRAERQRKVGELVLSREPLTGLDESARSQALVNLVRRKGLE 647
           LA+ V   +Q  WDE +G   AERQ KVG+++L  E +   + +    ALVN +R++GL+
Sbjct: 583 LADLVDTHEQCGWDETKGRAVAERQAKVGQILLKSETIANPNRAQIVAALVNYIRQQGLQ 642

Query: 648 LLPWTPELRQWQARVMLLRQLDAGKTSEWPDLSDKALLASLEHWLMPYLGKVSRLSHFAN 707
           +L W   L Q+QAR+ L R LD   T++WPD+SD ALLA LE WL PYL  V+ L     
Sbjct: 643 ILNWNANLEQFQARLHLARSLD--PTADWPDMSDAALLADLETWLAPYLENVNNLPQLQK 700

Query: 708 LDISSFLHNLLPWPLPQRLDELAPQHVKVPSGSSVRLDY-SEQPPILAVRLQELFGLADT 766
           LD  S + N L W   Q LD L P    + +G+   + Y +    +L VRLQE FG+AD+
Sbjct: 701 LDCFSLVMNQLSWSQQQALDALLPTSWPLATGTFAPIVYETSGRALLRVRLQETFGMADS 760

Query: 767 PRIASGRVAVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDP 822
           P +A G++ V + LLSPA+RP+ +T DLA+FW+  Y EVKK+++GRYPKH WPDDP
Sbjct: 761 PLLAQGKLKVTMELLSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDP 816