Pairwise Alignments

Query, 298 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 320 a.a., Protein of unknown function DUF6, transmembrane (NCBI) from Rhodospirillum rubrum S1H

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 87/301 (28%), Positives = 139/301 (46%), Gaps = 34/301 (11%)

Query: 12  IAAFFALYVIWGSTYLVIRIGVEYWPPLLLAGIRFCTAGALMYGFLRWRGVPAP----TW 67
           +A    L  +WG++Y  I+IGVE  PPL L  +R   AG L+   +  RG+  P    TW
Sbjct: 11  LALLLMLATLWGASYTFIKIGVETIPPLTLIALRTLIAGTLLAAIIGGRGLRLPNDRGTW 70

Query: 68  PQWKAAGMIGLLL-LTVGNGGVSVAEHMGVSSGVAALAVATVPLFTLLCGYFWGARNTRL 126
            ++     +   +  T+    ++ AE     +G+AA+  AT P+F  L      A  TR 
Sbjct: 71  ARFLVQACLNSAIPFTL----IAWAEQT-TDAGLAAILNATTPVFAFLMT----ALITRH 121

Query: 127 EWA------GVILGIIGIAML-------NMGSTLQSSPMGAVLLLVAAASWAFGSVWSRQ 173
           E        GVI G+ GI ++        +G  L +        L  AA+  FG  +   
Sbjct: 122 EAVSGRKLLGVIAGLAGIGLIVGVQALGGLGRELWAQLAIVAATLCYAAAAIFGKTFKGL 181

Query: 174 LPLPQGAMASAAEMLVAGVALLMVSALSGERLQAVPPL-EGWLALAYLTVFGSIIAFNAY 232
            P     M  AA  L+ G ALL+  +L  +    + P     LAL  L+VF + +AF  Y
Sbjct: 182 DP-----MMPAAGSLICGAALLVPLSLVVDHPWTLAPSGRSLLALLALSVFSTALAFALY 236

Query: 233 MYLLKHVRPAAATSYAYVNPAVAVLLGIVFVGETIGLEEALAMLVIISAVLLISLPQWRK 292
             L++ +     T+ AY+   + V +G+V +GE +     L +  +++ V+ ++LP  RK
Sbjct: 237 FRLIQTLGSIGTTAQAYLRVPIGVAIGVVVLGEDLSATAWLGLGCVVAGVIAMTLP-GRK 295

Query: 293 P 293
           P
Sbjct: 296 P 296