Pairwise Alignments

Query, 298 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 315 a.a., putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  140 bits (353), Expect = 4e-38
 Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 16/299 (5%)

Query: 2   PGPRRFPLPLIAAFFALYVIWGSTYLVIRIGVEYWPPLLLAGIRFCTAGALMYGFLRWRG 61
           P  R  P  +I A+F +YV+WGSTY  I + ++ + P LL  +RF TAG ++ G    RG
Sbjct: 6   PSKRNLP-GVIIAYFLIYVVWGSTYFFIGVALKDFSPFLLGALRFTTAGLILLGICYLRG 64

Query: 62  VPAPTWPQWKAAGMIGLLLLTVGNGGVSVAEHMGVSSGVAALAVATVPLFTLLCGYFWGA 121
                    K + + G++LL V    V +A+    SS VA +A +T     LL    W  
Sbjct: 65  EQIFKKSLVKRSAVSGIVLLFVDMAVVMLAQRYLTSSLVAIIASSTALWILLLDVPMWRT 124

Query: 122 R-NTRLEWAGVILGIIGIAML-----NMGSTLQSSPMGAVLLLVAAASWAFGSVWSRQLP 175
                L  AG  +G  G+ ML     N       S  G +LL+    SWA G+++++   
Sbjct: 125 NFRNPLTIAGGGIGFGGVVMLYAEQLNAEWLHPQSERGILLLVFGCISWALGTLYAKYRS 184

Query: 176 LPQGAM----ASAAEMLVAGVALLMVSALSGERLQA---VPPLEGWLALAYLTVFGSIIA 228
             +  +     SA +ML A V   + + ++G+  +A      +  W +L YL  FGS++A
Sbjct: 185 SREEEVNAFAGSAWQMLFASVMFWICAVVNGDVREADLSTVSVTSWFSLLYLISFGSLLA 244

Query: 229 FNAYMYLLKHVRPAAAT-SYAYVNPAVAVLLGIVFVGETIGLEEALAMLVIISAVLLIS 286
           ++AY++LLK VRPAA   ++AYVNP +AVLLG+ F  E +   +   +LVI+  V+LIS
Sbjct: 245 YSAYVWLLK-VRPAAEVGTHAYVNPFIAVLLGVSFGNEQVTFVQLSGLLVILLGVMLIS 302