Pairwise Alignments

Query, 292 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 305 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 26/233 (11%)

Query: 75  RPGMQ-VVRALCLLGTSLFFTTALHYIPLAEATAVNFLAPILVTALSVPLLGEHVTRGQW 133
           RPG + +     L G  +F+  ++ YI +A A  + +LAP++    +  L  E +TR   
Sbjct: 78  RPGKRHLFNGAMLAGFMVFYVQSIGYINMANAVMLIYLAPLVSAIGAHFLFHERLTRQDL 137

Query: 134 LAVICGFVGVLIIIHPGGELFTPA---------VLLPLCSALFFCFYQLLTRILSQYDTP 184
           LA+    +GV+ I+ P  E  T +          LL L S   F          S Y + 
Sbjct: 138 LAIGIALIGVVAIL-PSLESLTGSTAELKGYGFALLALLSYSGFMLINRRPASASPYQST 196

Query: 185 TTSNFFAGLC------NTLVMSAMVPFFWQVPTLWHGALMLALGTCGMTAHLMLTQAFRF 238
                F  LC      +  VM ++  +FW         L L     G  A L   +A R 
Sbjct: 197 LIQLSFGALCLLPFALHQAVMPSLTQWFW---------LALIGVFPGFLAILFAVKALRV 247

Query: 239 AAPALLAPFGYCQIVFAGLLGWLVFNHTPDVTTVVGIGVICMSGLAAAWQQRR 291
              A      Y + V   +LGW +F        ++G G+I  +GL    ++RR
Sbjct: 248 LPAATFGTLAYIEPVTVVILGWSLFAEHLTPMQLMGCGLIICAGLIQTRKRRR 300