Pairwise Alignments

Query, 339 a.a., flagellar motor protein MotB from Pseudomonas simiae WCS417

Subject, 349 a.a., OmpA/MotB from Pseudomonas syringae pv. syringae B728a

 Score =  484 bits (1246), Expect = e-141
 Identities = 244/343 (71%), Positives = 277/343 (80%), Gaps = 13/343 (3%)

Query: 1   MENNQPIIIKRVKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60
           MENNQPIIIKRVKRF  GHHGGAWKIAFADFATAMMAFFLVLWLMS+ATPEQ +A+AGYF
Sbjct: 1   MENNQPIIIKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYF 60

Query: 61  KDPIGFSESGTPFVIDLGGSPQLAPERTINPEIKTESPQEKIPIERDTVEAMAEQVEQER 120
           KDP+GFS+SG+P+VIDLGGSP+++P +T+NPE++T    + +P+E +  E  AE VEQER
Sbjct: 61  KDPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPLEAENAETKAEAVEQER 120

Query: 121 LELLLQELQNKVEENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFED 180
           LE+LLQELQ KVEENPQL KFKDQI FEIT DGLRIQI DA NRPMFDSGSARLKPYFED
Sbjct: 121 LEMLLQELQTKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFED 180

Query: 181 ILLAMADTIKAVPNKISISGHTDAKPYAGQGDFGNWELSANRANAARRALVAGSYPDPQV 240
           ILLA+ADTIK+VPNK+SISGHTDA P+ G G FGNWELSANRANAARRALVAG+YPD QV
Sbjct: 181 ILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQV 240

Query: 241 ARVVGFASSQLFDAKDPFNPINRRIDIVVLTKKAQRAIEGD-----------PPPAPQPT 289
           ARVVG+ASS L+D ++P NPINRRIDIVVLTKKAQ  IEGD            P AP P 
Sbjct: 241 ARVVGYASSALYDRQNPTNPINRRIDIVVLTKKAQHRIEGDQNSGGAPATPAAPTAPAPA 300

Query: 290 QGA--GAPGEVPADPNAIPPGQEPLPAHELRQKLNLFDEGGVK 330
             A  GAP    A   A P  Q     HE+RQKLN+FD+G ++
Sbjct: 301 VPAAPGAPAAPGASTAAPPDPQAYAQPHEIRQKLNIFDDGKLR 343