Pairwise Alignments

Query, 339 a.a., flagellar motor protein MotB from Pseudomonas simiae WCS417

Subject, 280 a.a., putative flagellar motor protein MotB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 15/183 (8%)

Query: 105 ERDTVEAMAEQVEQE--RLELLLQELQNKV----EENPQLLKFKDQISFEITPDGLRIQI 158
           E++ + A+  Q + E    E  + ELQ+ +    E+  QLL          + D L ++ 
Sbjct: 83  EQEKLNALLSQKKNELSERERTINELQDMINAQNEKVKQLLNSVKDALLGFSTDELTVRE 142

Query: 159 TDA------ANRPMFDSGSARLKPYFEDILLAMADTI-KAVPNKISISGHTDAKPYAGQG 211
            D       +++ +F SGSARL    E+ L  +A+ + K     + I GHTD KP     
Sbjct: 143 KDGKVYVAMSDKLLFQSGSARLDKRGEEALGKLAEVLNKQTDIDVFIEGHTDNKPINTVQ 202

Query: 212 DFGNWELSANRANAARRALVAGSYPDPQVARVVGFASSQLFDAKDPF--NPINRRIDIVV 269
              NW+LS  RA +  R L+     +P   +  G       D  +       NRR +I++
Sbjct: 203 FKDNWDLSVIRATSVVRILIKNYGVNPLQIQPSGRGEYMPVDDNETAEGRSKNRRTEIIM 262

Query: 270 LTK 272
             K
Sbjct: 263 APK 265