Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 190 a.a., RNA polymerase subunit sigma-24 from Pseudomonas fluorescens FW300-N2E3

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 6/161 (3%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           +FL     +   ++R+V     AADLVQ+ FLR   +P  + ++    YL R A N+ ID
Sbjct: 26  VFLSQRPQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQ-VEELSTYLLRCAGNIAID 84

Query: 69  HIRQEARRKTDAVPHEALAEIEDEVAGLEAQAM--AQQQRQALKQALAELPERTQQIFRL 126
           H+R E  R      +E     +     +E QA   A    + ++ AL  LPERT+QIF L
Sbjct: 85  HLRSEGARVR---LNEGWLPEQQHNLSVEPQAALEAGNDLRHVEAALRGLPERTRQIFLL 141

Query: 127 NRIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQDGE 167
           NRI G  +A++A+ + +S S+V+KH+ +AL      L++ E
Sbjct: 142 NRIHGRKYAEIAKAMGLSQSAVEKHMMRALEACKASLREPE 182