Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 187 a.a., Sigma-70 region 2 from Pseudomonas syringae pv. syringae B728a

 Score = 77.4 bits (189), Expect = 1e-19
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 1   MSDVDLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYR 60
           +S  D   +FL     L   L R V +   A DL+QE++LR++       + + + ++++
Sbjct: 16  VSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRALTEHPVAHLEPFVFQ 75

Query: 61  TASNLLIDHIRQEARRKTDAVPHEALAEIEDEVAGL---EAQAMAQQQRQALKQALAELP 117
           TA NL +DH+R         +   + A +E+ VA L   E  A A++  + L  +L+ L 
Sbjct: 76  TARNLALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHAKRLLENLSASLSTLS 135

Query: 118 ERTQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALA 157
            R Q+IF L+R++G ++ ++A  L +S S+VQK L   +A
Sbjct: 136 PRQQKIFTLSRLDGRSYLEIAEQLQVSASTVQKELKLIMA 175