Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 172 a.a., sigma-70 family RNA polymerase sigma factor from Pseudomonas fluorescens SBW25-INTG

 Score = 89.0 bits (219), Expect = 4e-23
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 3/160 (1%)

Query: 1   MSDVDLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYR 60
           MS      +F+     L   L R V +   A DL+QE++LR+    +   ID+ + ++Y+
Sbjct: 1   MSQSRFNHVFITQRVVLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQ 60

Query: 61  TASNLLIDHIRQ---EARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELP 117
           TA NL +DH+R    +AR   + VP + L  +   ++  E    A+Q  +AL  +L +L 
Sbjct: 61  TARNLALDHLRARRIQARTLQEDVPMDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLS 120

Query: 118 ERTQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALA 157
            R QQIF L+R+ G ++ ++A  L++S S+VQK L   +A
Sbjct: 121 ARQQQIFILSRLHGCSYQEIADQLEVSLSTVQKELKLIMA 160