Pairwise Alignments

Query, 578 a.a., peptidase from Pseudomonas simiae WCS417

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (407), Expect = 8e-44
 Identities = 142/558 (25%), Positives = 265/558 (47%), Gaps = 29/558 (5%)

Query: 12  LKAYKSGFFNIGLFSAVINLLMLAPALYMLQVYDRVLASG----NQMTLLMLTLMILGLF 67
           ++ YK+G   +   + VIN    A   YM+ +   +L  G        L +L  MILGL 
Sbjct: 20  IRLYKAGLV-VSTIALVINA---AADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM 75

Query: 68  GLMGALEWVRSQVVIRLGTQMDMRLNQRVYDAAFEAQLKGGTQAAGQALHDLTTLRQF-- 125
            + G   +  S  +  +   + M++ +R+++      ++   Q +   L    T      
Sbjct: 76  FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQV 135

Query: 126 --ATGQALFAFFDAPWFPVYLLVIFLFHPWLGLLALVGAVLLIVLAWVNHHVSQAPMALA 183
             AT +AL +        + LL +  ++ W   L+LV  V+  V+A+    VS+    ++
Sbjct: 136 AGATSRALVSIVREGASIIGLLTLMFWNSWQ--LSLVLIVVAPVVAFAISFVSKRFRKIS 193

Query: 184 SQLSI---NASQQATANLRNADTIEAMGMLATLRARWFGQHQAFLAQQNLASEKTATVTA 240
             +     + +  A   L+    + + G     R R F +    + QQ +   K  +  +
Sbjct: 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR-FDKVSNSMRQQTM---KLVSAQS 249

Query: 241 WSKGVRLALQSL----VLGLGALLAVQGDITPGMMIAGSILMGRVLSPIDQLIGVWKQWG 296
            +  V   + SL    VL L ++ +++ ++TPG        M  ++ P+  L  V  ++ 
Sbjct: 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309

Query: 297 SARLAFDRLSQMLEANPARPE-RMTLPVPKGQLSVEQISACAPGSRRPALANLGFNLAAG 355
               A   L  +++    R   +       G++ V+ ++    G  +PAL+++ F++  G
Sbjct: 310 RGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQG 369

Query: 356 EVLGVIGPSGCGKSTLARILVGAWGPLAGKVRLDGADLALWDKQQLGPHIGYLPQDIQLF 415
           + + ++G SG GKST+A +    +   +G + LDG D+  +    L  H   + Q++ LF
Sbjct: 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429

Query: 416 AGSIAQNIARFTEVD--ADKVFAAAQLAGVHELILQLPQGYDTHLGEGGAGLSGGQKQRV 473
             +IA NIA   E +   +++  AA+ A   E I  +PQG DT +GE G  LSGGQ+QRV
Sbjct: 430 NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489

Query: 474 ALARALYGLPALIVLDEPNANLDEGGEHALLRAIAQLKQQRRTIILITHKPNVLSLTDQL 533
           A+ARAL     +++LDE  + LD   E A+  A+ +L Q+ +T+++I H+ + +   D++
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDEL-QKNKTVLVIAHRLSTIEQADEI 548

Query: 534 LILKDGQMQSFGPTARVL 551
           L++ +G++   G  A +L
Sbjct: 549 LVVDEGEIIERGRHADLL 566