Pairwise Alignments

Query, 283 a.a., flagellar motor protein MotA from Pseudomonas simiae WCS417

Subject, 281 a.a., flagellar motor protein MotA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  211 bits (536), Expect = 2e-59
 Identities = 115/283 (40%), Positives = 179/283 (63%), Gaps = 5/283 (1%)

Query: 1   MAKIIGIIVVFASVLGGYVLSHGKIAALIQPFEVMIIGGAALGAFLQANPGYMTMHVIKK 60
           M  IIG++VVF S+L GY++SHG +  L QP E++II GAA+GAF+ ++  Y    V+K 
Sbjct: 1   MFAIIGLVVVFGSILTGYLMSHGVLHVLWQPAELIIILGAAIGAFIVSSTKYSLGLVLKN 60

Query: 61  SLGMFGSR-FTHTFYLEVLGLVYEILNKSRREGMMAIEADIEDAAASPIFAKYPAVLKDE 119
              + G    +   YL+VLGL+  +  K  REG+++IE DIE    S IF KYPA+ KD+
Sbjct: 61  LKLVLGDPGMSKAKYLDVLGLLNSLFVKMHREGVISIEQDIEKPEGSSIFNKYPAIAKDK 120

Query: 120 RMTAYICDYLRI-MSSGNMAPHELEGLFDMELFSLKEELEHPSHAVTGIADGMPGFGIVA 178
               +I D LR+ +++G+  P+E++ L ++++ S+ EE     H++  +A+ +PG GIVA
Sbjct: 121 HTVHFIGDTLRVYLTTGD--PNEIDSLMEVDMKSMHEEESIAPHSIGRMAESLPGMGIVA 178

Query: 179 AVLGIVVTMASLGEGDQAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEINLY 238
           AVLG+V+TM  + E  +  +G H+GAAL+GTF GIL  YG FGP+   +     E    +
Sbjct: 179 AVLGVVLTMGKISEPPEV-LGHHIGAALIGTFIGILFCYGVFGPMGAKIEQANHEHHMYF 237

Query: 239 ESIKASLVASASGMPPSLAVEFGRKVLYPKHRPSFAELEQAVR 281
             IK ++ A+  G  P +AVE+GR+ +    RP+FAE+E+ ++
Sbjct: 238 AVIKEAVAAAIRGSTPIIAVEYGRRAIPHTFRPTFAEMEEKLK 280