Pairwise Alignments

Query, 283 a.a., flagellar motor protein MotA from Pseudomonas simiae WCS417

Subject, 289 a.a., chemotaxis protein MotA (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  179 bits (455), Expect = 5e-50
 Identities = 104/284 (36%), Positives = 165/284 (58%), Gaps = 5/284 (1%)

Query: 1   MAKIIGIIVVFASVLGGYVLSHGKIAALIQ--PFEVMIIGGAALGAFLQANPGYMTMHVI 58
           M  IIGI+VVF  V GGY+ + GK+  +++  PFE+ +IGGAA+GAF+  N      H +
Sbjct: 1   MIGIIGIVVVFVMVFGGYLAAGGKMGIILKSLPFEMTMIGGAAVGAFVIGNDMSGIKHTL 60

Query: 59  KKSLGMF-GSRFTHTFYLEVLGLVYEILNKSRREGMMAIEADIEDAAASPIFAKYPAVLK 117
           K    +F G  +    Y ++L L++E++  +R +  + +E  IED AAS IF+KYP ++ 
Sbjct: 61  KDVKKVFKGPTWLAQDYKDLLCLLFELIRLAR-QNPVGLEEHIEDPAASNIFSKYPKIMA 119

Query: 118 DERMTAYICDYLRIMSSGNMAPHELEGLFDMELFSLKEELEHPSHAVTGIADGMPGFGIV 177
           D      I D +R  +     PH++E + +  + S  E   H SHA+  +ADG+P  GIV
Sbjct: 120 DREAIDLIADTMRSAAMNYDDPHQVEEVLEKRIESNHEHAMHGSHALQTVADGLPALGIV 179

Query: 178 AAVLGIVVTMASLGEGDQAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEINL 237
           AAVLG++ TM S+ +  +  +G  +G ALVGTF G+  AYG  GP +  +    +E+ + 
Sbjct: 180 AAVLGVIKTMGSIDQPPE-ILGKLIGGALVGTFLGVFLAYGLVGPFSAKVKSVVEEDAHF 238

Query: 238 YESIKASLVASASGMPPSLAVEFGRKVLYPKHRPSFAELEQAVR 281
           Y  I+  LVA+      +  +E GR+      RP+F++LE+A++
Sbjct: 239 YLLIREVLVANLHKHTVNNCIEVGRQNTPSHIRPTFSDLEEALK 282