Pairwise Alignments

Query, 438 a.a., peptidase from Pseudomonas simiae WCS417

Subject, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  169 bits (429), Expect = 1e-46
 Identities = 124/420 (29%), Positives = 200/420 (47%), Gaps = 15/420 (3%)

Query: 15  AVQALGLLDAYDLALRNDPTFQAAIQEREGGEENRAIGRAALLPNLSWSYNNSRNASEVT 74
           AVQA  LL  Y  AL NDP    A  +R    E     RA LLP +S +    +  ++  
Sbjct: 20  AVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTISANVGYDKAWND-- 77

Query: 75  AGDVTSERDYRSYASTLTLQQPLLDYEAYARFRQGTAQALMADERFRGKSQELAVRVLNA 134
                   D      +L L Q + D+ A+         A  AD  +    Q L  RV  A
Sbjct: 78  -----PRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASALQNLISRVTKA 132

Query: 135 YSQALLAQERIELSRAQKRAYAERLQLNDRLLKGGEGTRTDVLETQARLSLALAEEIESQ 194
           Y   L A++  E   A+KRA   +L+   +    G    TDV E QA+  LA A EI ++
Sbjct: 133 YFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQYDLASASEILAE 192

Query: 195 DAQDS---ALRELEAIIGQPLQIEELAPLTRQFEIPPLEPNRFETWREMAMANNPELKSQ 251
           +   +   ALRE+  I  + L + +    T +F      P+    W ++A  N+ +L +Q
Sbjct: 193 NTLANSYEALREITGIDHKALNVLD----TNRFSAVTPAPSSSTDWLKIAETNSVDLMTQ 248

Query: 252 HHALDVASYEVERKRAGHLPKVSLYAT-SRQTNSDSESSYNQKYDTNTVGIQVSLPLFAG 310
               D+A   +   +AGH+P +SL A  ++        +    +D  +VGI +S+P+F G
Sbjct: 249 RIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGINLSVPIFEG 308

Query: 311 GGVSASTRQAANQLSQAQYELDAQTSATLVELRKQFNLNTSGAAKVRAYEMAVSSATALV 370
             VS+  ++A  Q  QA   L+      +  +R  +N   +  + +RAYE +V S+ + +
Sbjct: 309 FKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQSVISSESAL 368

Query: 371 AATKKSVAGGERVNLDVLDAEQQLFTARRDLANARHAYLLARIQLKYYAGLLNEQDLRAL 430
            AT+     G R  +DVL+  + L+ ++R L++AR++Y+ + + LK  AG LNE D+ A+
Sbjct: 369 KATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTLNEDDVIAI 428