Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

 Score =  365 bits (937), Expect = e-105
 Identities = 179/359 (49%), Positives = 249/359 (69%), Gaps = 8/359 (2%)

Query: 8   YTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDKR 67
           Y AQL DK+ RL+ +   +  PE +VF+SP+ N+R+RAEFR+W EG + +Y MF+Q+  R
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQET-R 69

Query: 68  TPILIEAFPIASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLD 127
               ++ FP AS  IN LMP L  A + S  L HKLFQV+FL+TL+G+ +++L YHR L 
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLS 129

Query: 128 EHWHTAARQLAADLN-----VSIIGRSKGKRDVIGHDYVVEKLDVGGRTFSYRQPEGAFT 182
           E W TAA+ L   LN     +++IGR++  + V+  DYVVE L V G+ + Y+Q E +FT
Sbjct: 130 EEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFT 189

Query: 183 QPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242
           QPN  V +KML WA +   +   DLLELYCGNGNF+L LA    +VLATE++K SV AA 
Sbjct: 190 QPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQ 249

Query: 243 SNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLH--GIDLKSYEFGSVFVDPPRAGMDP 300
            N+  N + NV ++R+SAEE T+A+   R F RL   G+DL+SY   ++FVDPPR+GMD 
Sbjct: 250 FNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDI 309

Query: 301 DTCELTRRFDNILYISCNPETLAANIAQLHDTHKITQCAMFDQFPWTHHMESGVLLTRR 359
           DTC++ + ++ ILYISCNPETL  N+  L +TH++ + A+FDQFP+THHME+GV+L R+
Sbjct: 310 DTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368