Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 108/382 (28%), Positives = 154/382 (40%), Gaps = 58/382 (15%)

Query: 8   YTAQLQDKVTRLRDLLAPFDAPEPQVFDS-----PLQNFRLRAEFRLWR-EGGERHYAMF 61
           Y AQ++ K   ++D +      E +V  +     PL  +R +  + L R + GE     F
Sbjct: 95  YPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPL-GYRNKVSYPLRRSDRGEVQAGYF 153

Query: 62  SQDDKRTPILIEAFPIASTRINQLMPQLKAAWQA-----------SAALSHKLFQVEFLT 110
            +   R  I +   P+   R+N L+  +KA   A           S  L H   ++   T
Sbjct: 154 RKGSHRL-INLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRIGQRT 212

Query: 111 TLAGDAMITLCYHRPLDEHWHTAARQLAAD----------LNVSIIGRSKGKRD--VIGH 158
              G+ +ITL             A Q   D          LN S   R  G     + G 
Sbjct: 213 ---GEILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGDETHCLAGR 269

Query: 159 DYVVEKLDVGGRTFSYRQPEGAFTQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFT 218
            Y++E LD       +      F Q N    +++L    + L    D L +LYCG G  T
Sbjct: 270 PYLIECLD----DLEFAIGPETFFQVNTEQAERLLPILKDFLRGS-DRLFDLYCGVGTLT 324

Query: 219 LPLATRVRKVLATEISKTSVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHG 278
           LPLA+ V  VL  EI   SV  A  N D N + NV   R  A E+  A     P      
Sbjct: 325 LPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLAQIPESP------ 377

Query: 279 IDLKSYEFGSVFVDPPRAGMDPDTCEL--TRRFDNILYISCNPETLAANIAQL--HDTHK 334
                    +V +DPPR G +P   E+   R+   I Y+SCNP TLA ++  L   D ++
Sbjct: 378 --------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYR 429

Query: 335 ITQCAMFDQFPWTHHMESGVLL 356
           +      D FP T H+E+  LL
Sbjct: 430 LLLVQPLDFFPQTAHVETVALL 451