Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 366 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Rahnella sp. WP5

 Score =  357 bits (917), Expect = e-103
 Identities = 178/356 (50%), Positives = 247/356 (69%), Gaps = 6/356 (1%)

Query: 8   YTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDKR 67
           Y  QL +K  RL  +++P++AP+P VF SP+ ++R+RAEFR+W + G+ ++ MF Q  K 
Sbjct: 11  YDDQLAEKTARLTAMMSPYNAPQPDVFRSPVSHYRMRAEFRVWHDEGDLYHIMFDQQTKA 70

Query: 68  TPILIEAFPIASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLD 127
             + ++ FP AS  IN+LMP+L AA +   AL  K+FQ+++L+T +G  + +L YHR LD
Sbjct: 71  R-VRVDQFPTASELINRLMPKLIAAIKQDPALRRKIFQIDYLSTRSGKIIASLLYHRKLD 129

Query: 128 EHWHTAAR----QLAAD-LNVSIIGRSKGKRDVIGHDYVVEKLDVGGRTFSYRQPEGAFT 182
           + W  AA     QL AD  ++ +IGR+   + ++  DYV E L V GR   YRQ E +FT
Sbjct: 130 DEWQQAATALRDQLRADGFDIQLIGRAAKTKIMLDQDYVDEVLPVAGRDMIYRQVENSFT 189

Query: 183 QPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242
           QPN  +N +ML WA +A  +   DLLELYCGNGNF+L LA   R+VLATEI+K SV AA 
Sbjct: 190 QPNAEMNIQMLEWALKATENSTGDLLELYCGNGNFSLALARNFRRVLATEIAKPSVIAAQ 249

Query: 243 SNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 302
            N+  N +DNV ++R++AE+ T+ALN VR FRRL  IDL  YE  ++FVDPPR+G+D +T
Sbjct: 250 FNIAANHIDNVQIIRMAAEDFTQALNGVREFRRLQDIDLSGYECNTIFVDPPRSGLDDET 309

Query: 303 CELTRRFDNILYISCNPETLAANIAQLHDTHKITQCAMFDQFPWTHHMESGVLLTR 358
            ++   +D ILYISCNPETL AN+  L  TH++T+ A+FDQFP+THHMESGVLL +
Sbjct: 310 VKMVAGYDRILYISCNPETLCANLETLSKTHRVTRLALFDQFPYTHHMESGVLLEK 365