Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rahnella sp. WP5

 Score = 82.0 bits (201), Expect = 3e-20
 Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 28/302 (9%)

Query: 61  FSQDDKRTPILIEAFPIASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITL 120
           F Q+     + I   P+    + QL+  ++    + +A + +L  +E +    G  ++ L
Sbjct: 163 FRQEGSNDLVAITKCPVLRPELEQLLVPVQECLSSLSA-AKRLGHLEMVLADNGPLLV-L 220

Query: 121 CYHRPLDEHWHTAARQLAAD--LNVSIIGRSKGKRDVIGHD--YVVEKLDVGGRTFSYRQ 176
            +  PL E         AA   L + +   S+    + G    Y ++ L++    F  R 
Sbjct: 221 RHLDPLSEADRARLTAFAAQHQLTIFLAPDSETLEPLCGEPPYYQIDGLNL---KFGPRD 277

Query: 177 PEGAFTQPNGTVNQKMLNWAYEALGDRPDD-LLELYCGNGNFTLPLATRVRKVLATEISK 235
               F Q N  VNQ+M+  A + L   P+D +L+L+CG GNFTLPLA R  +V+  E   
Sbjct: 278 ----FIQVNDAVNQQMVAQALDWLELTPEDRVLDLFCGMGNFTLPLAKRANQVVGVEGVA 333

Query: 236 TSVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPR 295
           T V     N   N ++NV+      E L + +++ +P+         +  F  + +DP R
Sbjct: 334 TLVANGQDNARNNGLENVSFFH---ENLEDDVSK-QPW--------AAQGFNKILLDPAR 381

Query: 296 AGMDPDTCELTRRFD-NILYISCNPETLAANIAQLHDT-HKITQCAMFDQFPWTHHMESG 353
            G       + +     ++Y+SCNP TLA +   L +  +++    M D FP T H+ES 
Sbjct: 382 GGAAGVMTHIVKLAPARVVYVSCNPTTLARDSKILLEAGYRLAGVRMLDMFPHTGHLESM 441

Query: 354 VL 355
            L
Sbjct: 442 AL 443