Pairwise Alignments

Query, 335 a.a., ubiquinol oxidase subunit II from Pseudomonas simiae WCS417

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (341), Expect = 1e-36
 Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 39/361 (10%)

Query: 5   LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFI-PGKTDRDVMMNTVAPVWDGNETWLVL 63
           L LIW  +I   ++ +++ DGFD+G+G L P +   ++D+ VM+N++AP WDGN+ WL+ 
Sbjct: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66

Query: 64  GGAALFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKDHK-RHLWDKAFIGG 122
            G ALF A+PL Y+   S+LY+ + L+L+ L  R +A E+R K      R + D +    
Sbjct: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126

Query: 123 SLAATFFQGVALGAFIDGIP-----VVDRQFAGGSLDWATPFTMFCGVALIVAYALLGCT 177
            L      GVA G  + G+P     ++   + G  +D  TPF++  G   ++   + G  
Sbjct: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQGSA 186

Query: 178 WLIMKTEGPLQEKMHNLAR--PLAFVVLAVIG-----------IVSI--WTPLTHP---- 218
           WL +KT   L +K    A+   L    L +IG           IVS   +  +++P    
Sbjct: 187 WLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNKV 246

Query: 219 --EIASRWFTLPNLF---WFLPVPILVLVTMYGLFRAVARHAHYTPFLLTLVLIFLGYSG 273
             + A  W T    +   WF P+  L++    G+F +         F+   V        
Sbjct: 247 VFQQAGAWLTNFERYPWMWFAPMGGLMMA--MGVFLSAKWKNDAITFVCASVTNACIILT 304

Query: 274 LGISLWPNIIPP------SVSIWDAAAPPQSQGFMLVGTLFIIPFILGYTFWSYYVFRGK 327
            G +++P I+P       S+++WDA +  ++   M      ++P IL YT +SY    G+
Sbjct: 305 AGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTMFGR 364

Query: 328 V 328
           +
Sbjct: 365 L 365