Pairwise Alignments

Query, 335 a.a., ubiquinol oxidase subunit II from Pseudomonas simiae WCS417

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  159 bits (401), Expect = 1e-43
 Identities = 110/363 (30%), Positives = 163/363 (44%), Gaps = 43/363 (11%)

Query: 5   LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTD--RDVMMNTVAPVWDGNETWLV 62
           L LIW V+I   ++ + + DGFD+G+G L P I GK D  R VM+N++AP WDGN+ WL+
Sbjct: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPII-GKNDNERRVMINSIAPHWDGNQVWLI 65

Query: 63  LGGAALFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKDHK-RHLWDKAFIG 121
             G ALF A+PL Y+   S  YL +I+ L  L  R V  ++R K +  K R+ WD A   
Sbjct: 66  TAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISA 125

Query: 122 GSLAATFFQGVALGAFIDGIPVVDRQFA-----GGSLDWATPFTMFCGVALIVAYALLGC 176
                    GVA G  + G+P     F      G       PF + CG+  +    L G 
Sbjct: 126 SGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGS 185

Query: 177 TWLIMKTEGPLQEKMHNLARPLAFVVLAVIGIVSIW-------------------TPLTH 217
            WL MKT   + ++  N+A+    +          W                    PL  
Sbjct: 186 AWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNK 245

Query: 218 PEIASRWFTLPNLFWFLPVPILVLVTMYGLFRAV--ARHAHYTPFLLTLVLIFLGYSGL- 274
             I      L N   F  VP+L L    G+   +     +      L  +   LG +G+ 
Sbjct: 246 EVIREAGAWLHN---FEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVI 302

Query: 275 ---GISLWPNIIPP------SVSIWDAAAPPQSQGFMLVGTLFIIPFILGYTFWSYYVFR 325
              G +++P ++P       S+++WDA +   +   M V  + ++P ILGYT WSYY   
Sbjct: 303 FTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMF 362

Query: 326 GKV 328
           G++
Sbjct: 363 GRL 365