Pairwise Alignments

Query, 418 a.a., integrase from Pseudomonas simiae WCS417

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  532 bits (1371), Expect = e-156
 Identities = 252/411 (61%), Positives = 317/411 (77%)

Query: 1   MPAQTLRLSDRQLKGVKPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKNRINMGL 60
           M   T++L+D+++K  KP  K+Y L DGDGL+LR++ NGS  W FNY  P    R N+  
Sbjct: 1   MAKNTVKLTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSF 60

Query: 61  GTYPELSLANARKMAVQARELLAQGIDPKVQRDTLNEAKRAETEHTFENVATAWFDLKKD 120
           G YP++SL  ARK  + A+EL+AQGIDP+  R    +  +   EHTFENV   WF +K++
Sbjct: 61  GMYPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQN 120

Query: 121 SVTPAYAEDIWRSLTLHVFPDLKTTPLAKITAPMVIELLRPIEAKGSLETVKRLSQRLNE 180
            VTP YA DIWRSL LH+FP +   P+  ITAP +IELL+PIEAKGSLETVKRL+QRLNE
Sbjct: 121 DVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNE 180

Query: 181 IMTYGVNSGLIFANPLSGIRAVFKKPKKENMAALPPEELPELMLELANASIKRTTRCLIE 240
           +M +  N GLI ANPL+GI+A FKKPKKENMAAL P ELPELM  +ANASIKRTTRCL+E
Sbjct: 181 VMNFATNCGLIQANPLTGIKAAFKKPKKENMAALTPAELPELMSAIANASIKRTTRCLLE 240

Query: 241 WQLHTMTRPAEAATTRWSDIDFEKRIWTIPPERMKKRRPHSIPLSDQAMALLDILKSHSG 300
           WQLHTMTRPAEA+  RW +I++E+++WTIP ERMKKRR H IPL++Q +ALL+++K  SG
Sbjct: 241 WQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISG 300

Query: 301 HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSIASTILNEHGWDPELIEVA 360
           HR+++FP+DR P+   NSQTANMALKRMGF  RLVSHG+RS+AST LNE G+DP+L+E A
Sbjct: 301 HRDFIFPSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESA 360

Query: 361 LAHVDKDEVRSAYNRADYIERRRTMMAWWSEHIQKAATGSLSAAAINHARD 411
           LAHVD ++VRSAYNR DY+ERR+ MM WWSEHI++AA GSLS       ++
Sbjct: 361 LAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAARGSLSVTGTKQLKN 411